JPsnpHou00125, JPsnpHou00125 (genetic_marker) Pyrus pyrifolia

Marker Overview


Name	JPsnpHou00125
dbSNP ID	N/A
Type	SNP
SNP Alleles	T/G
5' Flanking Sequence	GGTGCTTCATCTCTTATTTTTGTGTATTCTCTGGACTTTGCAAGAACACGTTTGGCAAAT GATGCCAAGGCTGCCAAGGAAGGGTGGGTGAAAGGCAGTTTAATGGTTTGGTTGATGTTT ACAAGAAAACCCTCAAGTCTGATGGCATTGCTGGGTTATATCGAGGATTCAACATCTCTC TTGTTGGAATTATCGTGTACCGTGGGCTTTACTTTGGCATGTACGATTCTCTGAAACCTG T
3' Flanking Sequence	GTTCTAACTGGTGGCCTGCGGGATAGCTTCTTTGCTAGCTTCTTTCTGGGATGGGGAATT ACGATCGGTGCTGGATTAGCTTCTTACCCTTTGGACACGGTGCGCAGAAGGATGATGATG ACCTCAGGAGAAGCTGTGAAATACAATAGCTCTTGGGATGCATTTAAGCAAATTATAAAA AACGAAGGTGCTAAGTCACTGTTTAAGGGTGCTGGAGCAAACATATTGCGTGCTGTTGCA GGTGCCGGTGTGCTTGCTGGCTATGACAAGCTGCAAGTCGTACTTCTTGGCAAAAAGTAT GGGTCTGGCGGCGGTGGTTAATGATATGCTATGTTGACGAAATCATTAGTTATTGTGTGA GCATCGACTCTAGTTGAAGAATTTGGATGAACAGAAGTGCTTTTATGTTTCCAAATGTTT GTGGATCTGTTATTAGAAAGTAATAGTTACAAGGATGAAGAAATTTGAATTTTGGGTGAT TGTTATCTGTACTTGAGCTCTGAATGGAAGTGACTTTTAAACGTTTT
Species	Pyrus pyrifolia
Publication	[view all]
Contact	Toshiya Yamamoto
Comment	SNP position in sequence: 242

Contact

Name

Details

Toshiya Yamamoto

First name:	Toshiya
Last name:	Yamamoto
Institution:	National Institute of Fruit Tree Science, Graduate School of Life and Environmental Sciences, University of Tsukuba
Address:	National Institute of Fruit Tree Science, 2-1 Fujimoto, Tsukuba, Ibaraki 305-8605, Japan
Country:	Japan
Email:	toshiya@affrc.go.jp
Last update:	Apr 2014

Publications


Year	Publication
2014	Terakami S, Nishitani C, Kunihisa M, Shirasawa K, Sato S, Tabata S, Kurita K, Kanamori H, Katayose Y, Takada N, Saito T, Yamamoto T. Transcriptome-based single nucleotide polymorphism markers for genome mapping in Japanese pear (Pyrus pyrifolia Nakai). Tree genetics & genomes. 2014; 10(4):853-863.

Map Positions


#	Map Name	Linkage Group	Bin	Position	Locus	MapViewer
1	Pear-integrated_consensus_map-IPCG-2017	LG17	N/A	216.94	JPsnpHou00125	View

Sequence

>JPsnpHou00125 ID=JPsnpHou00125; Name=JPsnpHou00125; organism=Pyrus pyrifolia; type=genetic_marker; length=769bp
GGTGCTTCATCTCTTATTTTTGTGTATTCTCTGGACTTTGCAAGAACACG
TTTGGCAAATGATGCCAAGGCTGCCAAGGAAGGGTGGGTGAAAGGCAGTT
TAATGGTTTGGTTGATGTTTACAAGAAAACCCTCAAGTCTGATGGCATTG
CTGGGTTATATCGAGGATTCAACATCTCTCTTGTTGGAATTATCGTGTAC
CGTGGGCTTTACTTTGGCATGTACGATTCTCTGAAACCTGTkGTTCTAAC
TGGTGGCCTGCGGGATAGCTTCTTTGCTAGCTTCTTTCTGGGATGGGGAA
TTACGATCGGTGCTGGATTAGCTTCTTACCCTTTGGACACGGTGCGCAGA
AGGATGATGATGACCTCAGGAGAAGCTGTGAAATACAATAGCTCTTGGGA
TGCATTTAAGCAAATTATAAAAAACGAAGGTGCTAAGTCACTGTTTAAGG
GTGCTGGAGCAAACATATTGCGTGCTGTTGCAGGTGCCGGTGTGCTTGCT
GGCTATGACAAGCTGCAAGTCGTACTTCTTGGCAAAAAGTATGGGTCTGG
CGGCGGTGGTTAATGATATGCTATGTTGACGAAATCATTAGTTATTGTGT
GAGCATCGACTCTAGTTGAAGAATTTGGATGAACAGAAGTGCTTTTATGT
TTCCAAATGTTTGTGGATCTGTTATTAGAAAGTAATAGTTACAAGGATGA
AGAAATTTGAATTTTGGGTGATTGTTATCTGTACTTGAGCTCTGAATGGA
AGTGACTTTTAAACGTTTT