JPsnpHou00107, JPsnpHou00107 (genetic_marker) Pyrus pyrifolia

Marker Overview


Name	JPsnpHou00107
dbSNP ID	N/A
Type	SNP
SNP Alleles	T/C
5' Flanking Sequence	GCCACTGCAGGCAAGGACTCTACTCACGTTATTGCCGGAACACATGGCTATATTGCTCCT GAATATGGATACACTTACAAAGTGAACGAGAAGAGTGATGTGTACAGCTTCGGAGTGGTA CTAATGGAGCTAGTGACGGGGAAAAGGCCGATAGAGCCAGAGTTCGGGGAGAACAAGGAC ATAGTGAGCTGGGTAAGCAGCATGCTCAAGAGTAGAGAGAGCATATTAAGTATGGTGGAC
3' Flanking Sequence	CATTTATTCCAGAGGTGTACAAGGAAGAGGCTATCAAGGTGTTAAGAATTGCAGTTCTGT GCACGGCTAGGTTGCCGGAGCTAAGACCCTCCATGAGAAGTGTGGTTCAAATGCTAGAAG AAGCTCACGAGACGTTTAAATTGCTCAAAATTGTTATCGGCAAGGATGATGCCGCTGGTA ATAAGAAAATGGAACTAGCGAAGGGTATAGATAATTGAAACTAATCAAGACTCCGGCCGC GCTTTGAAAATTAATTGGTCGAAGCAGCCCAATTACGAGAGCTGAGATTGCTTGTAACAT ATTAGCCAGAGCCTGCAGATTGCATATGGATTATATATAGATATATATATATATATATAT ATATGTTGTCAGTTTTGTGGATAGTAAAATAGTTAGCAGGTACTTTTTGTACTGATATAT GTATCTCCTACTGGCTACTACTAGTTA
Species	Pyrus pyrifolia
Publication	[view all]
Contact	Toshiya Yamamoto
Comment	SNP position in sequence: 241

Contact

Name

Details

Toshiya Yamamoto

First name:	Toshiya
Last name:	Yamamoto
Institution:	National Institute of Fruit Tree Science, Graduate School of Life and Environmental Sciences, University of Tsukuba
Address:	National Institute of Fruit Tree Science, 2-1 Fujimoto, Tsukuba, Ibaraki 305-8605, Japan
Country:	Japan
Email:	toshiya@affrc.go.jp
Last update:	Apr 2014

Publications


Year	Publication
2014	Terakami S, Nishitani C, Kunihisa M, Shirasawa K, Sato S, Tabata S, Kurita K, Kanamori H, Katayose Y, Takada N, Saito T, Yamamoto T. Transcriptome-based single nucleotide polymorphism markers for genome mapping in Japanese pear (Pyrus pyrifolia Nakai). Tree genetics & genomes. 2014; 10(4):853-863.

Map Positions


#	Map Name	Linkage Group	Bin	Position	Locus	MapViewer
1	Pear-integrated_consensus_map-IPCG-2017	LG15	N/A	223.46	JPsnpHou00107	View

Sequence

>JPsnpHou00107 ID=JPsnpHou00107; Name=JPsnpHou00107; organism=Pyrus pyrifolia; type=genetic_marker; length=688bp
GCCACTGCAGGCAAGGACTCTACTCACGTTATTGCCGGAACACATGGCTA
TATTGCTCCTGAATATGGATACACTTACAAAGTGAACGAGAAGAGTGATG
TGTACAGCTTCGGAGTGGTACTAATGGAGCTAGTGACGGGGAAAAGGCCG
ATAGAGCCAGAGTTCGGGGAGAACAAGGACATAGTGAGCTGGGTAAGCAG
CATGCTCAAGAGTAGAGAGAGCATATTAAGTATGGTGGACyCATTTATTC
CAGAGGTGTACAAGGAAGAGGCTATCAAGGTGTTAAGAATTGCAGTTCTG
TGCACGGCTAGGTTGCCGGAGCTAAGACCCTCCATGAGAAGTGTGGTTCA
AATGCTAGAAGAAGCTCACGAGACGTTTAAATTGCTCAAAATTGTTATCG
GCAAGGATGATGCCGCTGGTAATAAGAAAATGGAACTAGCGAAGGGTATA
GATAATTGAAACTAATCAAGACTCCGGCCGCGCTTTGAAAATTAATTGGT
CGAAGCAGCCCAATTACGAGAGCTGAGATTGCTTGTAACATATTAGCCAG
AGCCTGCAGATTGCATATGGATTATATATAGATATATATATATATATATA
TATATGTTGTCAGTTTTGTGGATAGTAAAATAGTTAGCAGGTACTTTTTG
TACTGATATATGTATCTCCTACTGGCTACTACTAGTTA