JPsnpHou00519, JPsnpHou00519 (genetic_marker) Pyrus pyrifolia

Marker Overview


Name	JPsnpHou00519
dbSNP ID	N/A
Type	SNP
SNP Alleles	A/G
5' Flanking Sequence	ACGCTCTCTGAGACCGTACGTCTTGATGCAAGGACCAAGTTGTTGAACCCTAAGTGGTAC GAGGGGATGTTGTCTAGCGGATACGAGGGTGTTCGTGAAATTGAGAAAAGGCTGACTAAC ACAGTTGGGTGGAGTGCAACTTCTGGCCAAGTTGACAACTGGGTGTACGAAGAGGCCAAC ACAACTTTCATTCAAGACAAGGAGATGTTGGAAAGGCTCATGAAAACAAATCC
3' Flanking Sequence	AACTCCTTCAGGAAGCTGGTACAGACATTCCTTGAGGCCAACGGACGTGGTTACTGGGAC ACTGCAGAGGAGAACATTGAGAnGCTGAAAGAGCTGTACCAAGAAGTTGAAGACAAAATT GAGGGAATCGATCGGTAAACTCATAnTCATTGTTGAGAACACTGTAAATTAATTTGAAAA TATCAGTAACACTACGATTTACTTGAGCTCCTCTCTCCCCCTTCCTTCCTCCAGCTCCTC CTTCCAAAAGGAGCATAGGCAAAGCCTCTAGGAACTGTCTAGTGTnTAATGTCAACTCTT TAACCAGTTCCCCACTGTAGTTCAATCCGTCAGGGATATGTATCTGTACTGCTACTTGCA GAATTTGAAGTCCTACAAATACATGTTTTCACAATTTGTC
Species	Pyrus pyrifolia
Publication	[view all]
Contact	Toshiya Yamamoto
Comment	SNP position in sequence: 234

Contact

Name

Details

Toshiya Yamamoto

First name:	Toshiya
Last name:	Yamamoto
Institution:	National Institute of Fruit Tree Science, Graduate School of Life and Environmental Sciences, University of Tsukuba
Address:	National Institute of Fruit Tree Science, 2-1 Fujimoto, Tsukuba, Ibaraki 305-8605, Japan
Country:	Japan
Email:	toshiya@affrc.go.jp
Last update:	Apr 2014

Publications


Year	Publication
2014	Terakami S, Nishitani C, Kunihisa M, Shirasawa K, Sato S, Tabata S, Kurita K, Kanamori H, Katayose Y, Takada N, Saito T, Yamamoto T. Transcriptome-based single nucleotide polymorphism markers for genome mapping in Japanese pear (Pyrus pyrifolia Nakai). Tree genetics & genomes. 2014; 10(4):853-863.

Map Positions


#	Map Name	Linkage Group	Bin	Position	Locus	MapViewer
1	Pear-integrated_consensus_map-IPCG-2017	LG14	N/A	58.95	JPsnpHou00519	View

Sequence

>JPsnpHou00519 ID=JPsnpHou00519; Name=JPsnpHou00519; organism=Pyrus pyrifolia; type=genetic_marker; length=634bp
ACGCTCTCTGAGACCGTACGTCTTGATGCAAGGACCAAGTTGTTGAACCC
TAAGTGGTACGAGGGGATGTTGTCTAGCGGATACGAGGGTGTTCGTGAAA
TTGAGAAAAGGCTGACTAACACAGTTGGGTGGAGTGCAACTTCTGGCCAA
GTTGACAACTGGGTGTACGAAGAGGCCAACACAACTTTCATTCAAGACAA
GGAGATGTTGGAAAGGCTCATGAAAACAAATCCrAACTCCTTCAGGAAGC
TGGTACAGACATTCCTTGAGGCCAACGGACGTGGTTACTGGGACACTGCA
GAGGAGAACATTGAGAnGCTGAAAGAGCTGTACCAAGAAGTTGAAGACAA
AATTGAGGGAATCGATCGGTAAACTCATAnTCATTGTTGAGAACACTGTA
AATTAATTTGAAAATATCAGTAACACTACGATTTACTTGAGCTCCTCTCT
CCCCCTTCCTTCCTCCAGCTCCTCCTTCCAAAAGGAGCATAGGCAAAGCC
TCTAGGAACTGTCTAGTGTnTAATGTCAACTCTTTAACCAGTTCCCCACT
GTAGTTCAATCCGTCAGGGATATGTATCTGTACTGCTACTTGCAGAATTT
GAAGTCCTACAAATACATGTTTTCACAATTTGTC