JPsnpHou00469, JPsnpHou00469 (genetic_marker) Pyrus pyrifolia

Marker Overview


Name	JPsnpHou00469
dbSNP ID	N/A
Type	SNP
SNP Alleles	A/G
5' Flanking Sequence	CGGGAGAGCTCCACCGCCGATTCATGGCGGCGACGCAGGCGAGTCTTCTCCTCCAGAAAC AGCTCAAGGATCTTTGCAAGAACCCGGTCGACGGATTCTCGGCCGGTCTGGTCGATGAAA ACAATATCTTTGAGTGGAGCGTCACGATTATCGGACCGCCTGATACGCTCTATGAGGGGG GATTTTTCAATGCCATCATGAGCTTTCCAAATAATTATCCGAACAGCCCTCC
3' Flanking Sequence	ACGGTTAAGTTTACTTCCGAGATATGGCATCCAAATGTTTATACTGATGGGCGTGTTTGC ATATCTATTCTTCACCCCCCTGGTGAGGACCCAAATGGTTATGAGCTTGCAAGTGAGCGC TGGACACCTGTCCATACGGTTGAAAGCATAGTCTTGAGTATAATATCAATGCTATCCAGT CCAAATGATGAATCTCCTGCAAATGTTGAAGCGGCAAAGCAGTGGAGAGATCGGAGAGAG GAATTCAAGAAAAAGGTCAGTCGCTGCGTGAGGAATCACAGGAGATGCTATGAATTATCA AATATGATGTTCGCTACCAAGTTAGAACATTTTACTCTTGCACAAGCGTGTGAGAGGAGG TGTGAA
Species	Pyrus pyrifolia
Publication	[view all]
Contact	Toshiya Yamamoto
Comment	SNP position in sequence: 233

Contact

Name

Details

Toshiya Yamamoto

First name:	Toshiya
Last name:	Yamamoto
Institution:	National Institute of Fruit Tree Science, Graduate School of Life and Environmental Sciences, University of Tsukuba
Address:	National Institute of Fruit Tree Science, 2-1 Fujimoto, Tsukuba, Ibaraki 305-8605, Japan
Country:	Japan
Email:	toshiya@affrc.go.jp
Last update:	Apr 2014

Publications


Year	Publication
2014	Terakami S, Nishitani C, Kunihisa M, Shirasawa K, Sato S, Tabata S, Kurita K, Kanamori H, Katayose Y, Takada N, Saito T, Yamamoto T. Transcriptome-based single nucleotide polymorphism markers for genome mapping in Japanese pear (Pyrus pyrifolia Nakai). Tree genetics & genomes. 2014; 10(4):853-863.

Map Positions


#	Map Name	Linkage Group	Bin	Position	Locus	MapViewer
1	Pear-integrated_consensus_map-IPCG-2017	LG3	N/A	121.76	JPsnpHou00469	View

Sequence

>JPsnpHou00469 ID=JPsnpHou00469; Name=JPsnpHou00469; organism=Pyrus pyrifolia; type=genetic_marker; length=599bp
CGGGAGAGCTCCACCGCCGATTCATGGCGGCGACGCAGGCGAGTCTTCTC
CTCCAGAAACAGCTCAAGGATCTTTGCAAGAACCCGGTCGACGGATTCTC
GGCCGGTCTGGTCGATGAAAACAATATCTTTGAGTGGAGCGTCACGATTA
TCGGACCGCCTGATACGCTCTATGAGGGGGGATTTTTCAATGCCATCATG
AGCTTTCCAAATAATTATCCGAACAGCCCTCCrACGGTTAAGTTTACTTC
CGAGATATGGCATCCAAATGTTTATACTGATGGGCGTGTTTGCATATCTA
TTCTTCACCCCCCTGGTGAGGACCCAAATGGTTATGAGCTTGCAAGTGAG
CGCTGGACACCTGTCCATACGGTTGAAAGCATAGTCTTGAGTATAATATC
AATGCTATCCAGTCCAAATGATGAATCTCCTGCAAATGTTGAAGCGGCAA
AGCAGTGGAGAGATCGGAGAGAGGAATTCAAGAAAAAGGTCAGTCGCTGC
GTGAGGAATCACAGGAGATGCTATGAATTATCAAATATGATGTTCGCTAC
CAAGTTAGAACATTTTACTCTTGCACAAGCGTGTGAGAGGAGGTGTGAA