JPsnpHou00337, JPsnpHou00337 (genetic_marker) Pyrus pyrifolia

Marker Overview


Name	JPsnpHou00337
dbSNP ID	N/A
Type	SNP
SNP Alleles	A/G
5' Flanking Sequence	ATTTCAGCCATATTTGGTCTCCCAGAGTCCGAGAGAGAGAGGAGCGGTGAAAGATGACTC GGGGAAAGCAGAAGATCGAAGCGCAGAGACGAAATGCGGAGAAGAATCAGAAGGCAAAAG GGTCTCAGTTTGAGGCCAGAGCCGTTGCTCTCAAAATCACCTGTCCAATTTGCAAGGTAC AACTTGCAAACCCGAAGCAACTTAGTGATCACTATGGTTCCAAACATCCCAG
3' Flanking Sequence	GAAAATCCTCCTCCGATCGAATCAGAATGATCAGTTTCTCATGTGAAAGAAAGCATTAAA GAGCAGAAGTAAAAAGTCCTTGCTGTGTTGTTTCAGAGTTTGGACTGTATAGACTTGTAT GAAATCCCTCCAGCTTCTGACCCTGGTTTGTAAACCGTTGTATGACTAGGATGAATGATT GATAATGTTCAGTCAGATCTGGAGTTACATTGGCTGTGAATTTAAnGTTTGTTTCTGCTC TAAGTTTCTATGTGTAATAAAGAATGAACTGAACAGAAACCCGAAAAnTTTCGTTGTATC TCAATATnGAACGAATAATTTAAACCAAAAAAAAAAAAA
Species	Pyrus pyrifolia
Publication	[view all]
Contact	Toshiya Yamamoto
Comment	SNP position in sequence: 233

Contact

Name

Details

Toshiya Yamamoto

First name:	Toshiya
Last name:	Yamamoto
Institution:	National Institute of Fruit Tree Science, Graduate School of Life and Environmental Sciences, University of Tsukuba
Address:	National Institute of Fruit Tree Science, 2-1 Fujimoto, Tsukuba, Ibaraki 305-8605, Japan
Country:	Japan
Email:	toshiya@affrc.go.jp
Last update:	Apr 2014

Publications


Year	Publication
2014	Terakami S, Nishitani C, Kunihisa M, Shirasawa K, Sato S, Tabata S, Kurita K, Kanamori H, Katayose Y, Takada N, Saito T, Yamamoto T. Transcriptome-based single nucleotide polymorphism markers for genome mapping in Japanese pear (Pyrus pyrifolia Nakai). Tree genetics & genomes. 2014; 10(4):853-863.

Map Positions


#	Map Name	Linkage Group	Bin	Position	Locus	MapViewer
1	Pear-integrated_consensus_map-IPCG-2017	LG6	N/A	33.44	JPsnpHou00337	View

Sequence

>JPsnpHou00337 ID=JPsnpHou00337; Name=JPsnpHou00337; organism=Pyrus pyrifolia; type=genetic_marker; length=572bp
ATTTCAGCCATATTTGGTCTCCCAGAGTCCGAGAGAGAGAGGAGCGGTGA
AAGATGACTCGGGGAAAGCAGAAGATCGAAGCGCAGAGACGAAATGCGGA
GAAGAATCAGAAGGCAAAAGGGTCTCAGTTTGAGGCCAGAGCCGTTGCTC
TCAAAATCACCTGTCCAATTTGCAAGGTACAACTTGCAAACCCGAAGCAA
CTTAGTGATCACTATGGTTCCAAACATCCCAGrGAAAATCCTCCTCCGAT
CGAATCAGAATGATCAGTTTCTCATGTGAAAGAAAGCATTAAAGAGCAGA
AGTAAAAAGTCCTTGCTGTGTTGTTTCAGAGTTTGGACTGTATAGACTTG
TATGAAATCCCTCCAGCTTCTGACCCTGGTTTGTAAACCGTTGTATGACT
AGGATGAATGATTGATAATGTTCAGTCAGATCTGGAGTTACATTGGCTGT
GAATTTAAnGTTTGTTTCTGCTCTAAGTTTCTATGTGTAATAAAGAATGA
ACTGAACAGAAACCCGAAAAnTTTCGTTGTATCTCAATATnGAACGAATA
ATTTAAACCAAAAAAAAAAAAA