JPsnpHou00657, JPsnpHou00657 (genetic_marker) Pyrus pyrifolia

Marker Overview


Name	JPsnpHou00657
dbSNP ID	N/A
Type	SNP
SNP Alleles	A/G
5' Flanking Sequence	GACACAGGGAACCTGTTTATTCTGTTGCTTTTAGCCCAAATGGTGAGTATTTGGCCAGTG GATCTCTTGATAAATCCATGCATATCTGGTCACTGAAGGAACGCAAGATTGTGAAAACGT ACACTGGAAGTGGCGGTATATTTGAAGTCTGCTGGAACAAGGAAGGCGACAAACTTGCTG CGTGTTTTGCCAACAACACTGTGTGCGTCTTGGATTTTAGAATGTAGA
3' Flanking Sequence	CTGGAAATGCCAAACCTGTCTTGTATTGGAAGTTGGTCGTCAAATCCCAGTCGTAGATTA GCTCTTCGTATTTGATTAGGATGGGTGGCGAGTGTATGTTAGGTGCGTAGGCATTGCATT TTAACCGTAGATCAAGGCTCGGCTCGCTAATGTTCATTTTGTTCnTAAGCTCGTTTCCTG ATTCAAGTGTTAATCGAGCTGCTTTTCTAGGAGAGGTGTACAGGATTGTTTTCAACATTT TTAGTTAGGCTTGTTAGCGTACTTTGCTTCTCAAAGTATGTACGGCATGCTACTGAAGAT TCTCAAGAAGGCTGTTATTCCAACTATTTTTTGNGGGTTTAAAAAAAAAAAACAAAAAAC CGAGACT
Species	Pyrus pyrifolia
Publication	[view all]
Contact	Toshiya Yamamoto
Comment	SNP position in sequence: 229

Contact

Name

Details

Toshiya Yamamoto

First name:	Toshiya
Last name:	Yamamoto
Institution:	National Institute of Fruit Tree Science, Graduate School of Life and Environmental Sciences, University of Tsukuba
Address:	National Institute of Fruit Tree Science, 2-1 Fujimoto, Tsukuba, Ibaraki 305-8605, Japan
Country:	Japan
Email:	toshiya@affrc.go.jp
Last update:	Apr 2014

Publications


Year	Publication
2014	Terakami S, Nishitani C, Kunihisa M, Shirasawa K, Sato S, Tabata S, Kurita K, Kanamori H, Katayose Y, Takada N, Saito T, Yamamoto T. Transcriptome-based single nucleotide polymorphism markers for genome mapping in Japanese pear (Pyrus pyrifolia Nakai). Tree genetics & genomes. 2014; 10(4):853-863.

Map Positions


#	Map Name	Linkage Group	Bin	Position	Locus	MapViewer
1	Pear-integrated_consensus_map-IPCG-2017	LG15	N/A	128.49	JPsnpHou00657	View

Sequence

>JPsnpHou00657 ID=JPsnpHou00657; Name=JPsnpHou00657; organism=Pyrus pyrifolia; type=genetic_marker; length=596bp
GACACAGGGAACCTGTTTATTCTGTTGCTTTTAGCCCAAATGGTGAGTAT
TTGGCCAGTGGATCTCTTGATAAATCCATGCATATCTGGTCACTGAAGGA
ACGCAAGATTGTGAAAACGTACACTGGAAGTGGCGGTATATTTGAAGTCT
GCTGGAACAAGGAAGGCGACAAACTTGCTGCGTGTTTTGCCAACAACACT
GTGTGCGTCTTGGATTTTAGAATGTAGArCTGGAAATGCCAAACCTGTCT
TGTATTGGAAGTTGGTCGTCAAATCCCAGTCGTAGATTAGCTCTTCGTAT
TTGATTAGGATGGGTGGCGAGTGTATGTTAGGTGCGTAGGCATTGCATTT
TAACCGTAGATCAAGGCTCGGCTCGCTAATGTTCATTTTGTTCnTAAGCT
CGTTTCCTGATTCAAGTGTTAATCGAGCTGCTTTTCTAGGAGAGGTGTAC
AGGATTGTTTTCAACATTTTTAGTTAGGCTTGTTAGCGTACTTTGCTTCT
CAAAGTATGTACGGCATGCTACTGAAGATTCTCAAGAAGGCTGTTATTCC
AACTATTTTTTGNGGGTTTAAAAAAAAAAAACAAAAAACCGAGACT