JPsnpHou00407, JPsnpHou00407 (genetic_marker) Pyrus pyrifolia

Marker Overview


Name	JPsnpHou00407
dbSNP ID	N/A
Type	SNP
SNP Alleles	A/G
5' Flanking Sequence	CGGAGACTTACAAGCAGTGGCAGATTAGAAACAAGAGAGCTGGGTTCAGGCAGTTACCGT CGGACCAGGAGATCTTGAAGTTAGTCAGGAGTATGGTGAAGAGAGATTACCATAAGGATT TCATCGTCGACGAAGATGGCATGTGGGTGTTGCAGGGATGGAAGGGCAGGATAGTCCATG CCATTTCGTACTGGAAACCTGTTTGAGAGTTACAAAAGGCGCTACG
3' Flanking Sequence	CAACCTCGATGTAACAAGGGCACCTGTTTGGCTTCTTGTGCATCAAATGGAAGGCnATGC CGGAAATGTGTTTnGCACTAGCAGTCAGCTCGATTTCTGCTGGTTTTCGGACTnCCGGAG AGTAGTTTTATGGGCTTAGATTAGGTAGTGCTGCTTAGAACTTACGAGCATGATATGTAG TTATAACTTATGTGCTAGTTAGTAGAGTGGCTAAGGTTAGCTATCCCCTCTCTTACAATC TGATTTGGGTGTACTAATAGTCCAGTTTAATGAAAGTTCTATCTTTATAGTACTAAAAAA AAAAAAACAGTAGACTAGACAACGACGACACAGGGA
Species	Pyrus pyrifolia
Publication	[view all]
Contact	Toshiya Yamamoto
Comment	SNP position in sequence: 227

Contact

Name

Details

Toshiya Yamamoto

First name:	Toshiya
Last name:	Yamamoto
Institution:	National Institute of Fruit Tree Science, Graduate School of Life and Environmental Sciences, University of Tsukuba
Address:	National Institute of Fruit Tree Science, 2-1 Fujimoto, Tsukuba, Ibaraki 305-8605, Japan
Country:	Japan
Email:	toshiya@affrc.go.jp
Last update:	Apr 2014

Publications


Year	Publication
2014	Terakami S, Nishitani C, Kunihisa M, Shirasawa K, Sato S, Tabata S, Kurita K, Kanamori H, Katayose Y, Takada N, Saito T, Yamamoto T. Transcriptome-based single nucleotide polymorphism markers for genome mapping in Japanese pear (Pyrus pyrifolia Nakai). Tree genetics & genomes. 2014; 10(4):853-863.

Map Positions


#	Map Name	Linkage Group	Bin	Position	Locus	MapViewer
1	Pear-integrated_consensus_map-IPCG-2017	LG11	N/A	56.56	JPsnpHou00407	View

Sequence

>JPsnpHou00407 ID=JPsnpHou00407; Name=JPsnpHou00407; organism=Pyrus pyrifolia; type=genetic_marker; length=563bp
CGGAGACTTACAAGCAGTGGCAGATTAGAAACAAGAGAGCTGGGTTCAGG
CAGTTACCGTCGGACCAGGAGATCTTGAAGTTAGTCAGGAGTATGGTGAA
GAGAGATTACCATAAGGATTTCATCGTCGACGAAGATGGCATGTGGGTGT
TGCAGGGATGGAAGGGCAGGATAGTCCATGCCATTTCGTACTGGAAACCT
GTTTGAGAGTTACAAAAGGCGCTACGrCAACCTCGATGTAACAAGGGCAC
CTGTTTGGCTTCTTGTGCATCAAATGGAAGGCnATGCCGGAAATGTGTTT
nGCACTAGCAGTCAGCTCGATTTCTGCTGGTTTTCGGACTnCCGGAGAGT
AGTTTTATGGGCTTAGATTAGGTAGTGCTGCTTAGAACTTACGAGCATGA
TATGTAGTTATAACTTATGTGCTAGTTAGTAGAGTGGCTAAGGTTAGCTA
TCCCCTCTCTTACAATCTGATTTGGGTGTACTAATAGTCCAGTTTAATGA
AAGTTCTATCTTTATAGTACTAAAAAAAAAAAAACAGTAGACTAGACAAC
GACGACACAGGGA