JPsnpHou00544, JPsnpHou00544 (genetic_marker) Pyrus pyrifolia

Marker Overview


Name	JPsnpHou00544
dbSNP ID	N/A
Type	SNP
SNP Alleles	A/T
5' Flanking Sequence	GGAGAACGGTAGCTGCAACGGATATTCTCCCAATTTGGTTTCATCTGTACCTTTTGAAGA GAACTCTCAAAAACTGAATCAGTTTACAGGTGATGTTGAAGAGTTGCCTAAAGAATTTCC AGTTCTAAGTGAAGACAAGAGAAATTATATCCCGGAAATGAGTGTATCTCCTCCTATTCT GGGATCACCTAAGAAAGCTTTGATTGTTTCAGCTGTGAACAA
3' Flanking Sequence	GAAGAAACTGGTGCAAAAACTAAGAATTTACCAATTTCTGAGATCTCTGAGATAGAAATC TCTACTCCACCAAGTGATGAAACACTCGCGGAACTCCACTCCAGGAAGAAGTGGAACAGC GATGAGAACTCTCCTAAAGCTGCCAAAGGGTTTAAGAAGCTTCTATTGTTTGGGCGGAAG AGCCGAAAACACTCCTGTCAATTGATATTTGTGGAACTAAGATAATTCATTGCTCGTAGC TTTTGTTTGCAGCATGTCATAATACTTTTCCATTGGTTTTTGGGTTGTTCGTGTCCAAAA GGGNTGGACCGACAATTGAATTGCTTGATAATGCAGCTGATGCATTTTTATGGCTGTCAA ATGGAATAGCCTCACAGCTCTCGTATCCAATAAGGCTTCCGGGTTTGCTGCCACACAAGG AGAGCAC
Species	Pyrus pyrifolia
Publication	[view all]
Contact	Toshiya Yamamoto
Comment	SNP position in sequence: 223

Contact

Name

Details

Toshiya Yamamoto

First name:	Toshiya
Last name:	Yamamoto
Institution:	National Institute of Fruit Tree Science, Graduate School of Life and Environmental Sciences, University of Tsukuba
Address:	National Institute of Fruit Tree Science, 2-1 Fujimoto, Tsukuba, Ibaraki 305-8605, Japan
Country:	Japan
Email:	toshiya@affrc.go.jp
Last update:	Apr 2014

Publications


Year	Publication
2014	Terakami S, Nishitani C, Kunihisa M, Shirasawa K, Sato S, Tabata S, Kurita K, Kanamori H, Katayose Y, Takada N, Saito T, Yamamoto T. Transcriptome-based single nucleotide polymorphism markers for genome mapping in Japanese pear (Pyrus pyrifolia Nakai). Tree genetics & genomes. 2014; 10(4):853-863.

Map Positions


#	Map Name	Linkage Group	Bin	Position	Locus	MapViewer
1	Pear-integrated_consensus_map-IPCG-2017	LG3	N/A	204.76	JPsnpHou00544	View

Sequence

>JPsnpHou00544 ID=JPsnpHou00544; Name=JPsnpHou00544; organism=Pyrus pyrifolia; type=genetic_marker; length=650bp
GGAGAACGGTAGCTGCAACGGATATTCTCCCAATTTGGTTTCATCTGTAC
CTTTTGAAGAGAACTCTCAAAAACTGAATCAGTTTACAGGTGATGTTGAA
GAGTTGCCTAAAGAATTTCCAGTTCTAAGTGAAGACAAGAGAAATTATAT
CCCGGAAATGAGTGTATCTCCTCCTATTCTGGGATCACCTAAGAAAGCTT
TGATTGTTTCAGCTGTGAACAAwGAAGAAACTGGTGCAAAAACTAAGAAT
TTACCAATTTCTGAGATCTCTGAGATAGAAATCTCTACTCCACCAAGTGA
TGAAACACTCGCGGAACTCCACTCCAGGAAGAAGTGGAACAGCGATGAGA
ACTCTCCTAAAGCTGCCAAAGGGTTTAAGAAGCTTCTATTGTTTGGGCGG
AAGAGCCGAAAACACTCCTGTCAATTGATATTTGTGGAACTAAGATAATT
CATTGCTCGTAGCTTTTGTTTGCAGCATGTCATAATACTTTTCCATTGGT
TTTTGGGTTGTTCGTGTCCAAAAGGGNTGGACCGACAATTGAATTGCTTG
ATAATGCAGCTGATGCATTTTTATGGCTGTCAAATGGAATAGCCTCACAG
CTCTCGTATCCAATAAGGCTTCCGGGTTTGCTGCCACACAAGGAGAGCAC