JPsnpHou00325, JPsnpHou00325 (genetic_marker) Pyrus pyrifolia

Marker Overview


Name	JPsnpHou00325
dbSNP ID	N/A
Type	SNP
SNP Alleles	A/G
5' Flanking Sequence	CTCCTTGTCTATGACATAACTAAGCGGCCAACTTTTGAGAATGTCCAAAGGTGGCTCCGT GAGTTGAGGGACCATGCAGATTCGAACATTGTTATCATGATGACTGGAAACAAGTCTGAC TTGATCAATCTCCGAGCTGTTTCAGAGGATGATGGTCAGTCCTTGGCTGAGAGGGAAGGT CTCTCATTTCTCGAGACATCAGCACTGGAAGCAACCAAC
3' Flanking Sequence	TTGAGAAGGCATTTCAAACTATTCTAACCGAGATCTACCATATTGTCAGCAAAAAnGCAC TGGCAGCTCAAGAAGCAGTCTCAACTACCCTACCTGGTCAAGGAACCACCATCGACGTTA GTGATGCTTCTGGGAATACAAACAAGAGAGGTTGCTGCTCGACATAAAAGATGACACACG TAGGGGGAAGGAGGGGAATTATTTTGCTGGATGCCAGCTCTTTTGATTTTTCTCTTTTTA GTTCTTTTTTCTGGTGACAGGGAAGCATGTAGAATACAGTTTTACTTCGACGATTTGTGG TAAGGAAGTTTGTGAAAATTATAATGACAGTAGTATCGGTACATTTTGAGGGCCTGCTTT TACATCCGATGCACCGTTTTGTATATGTTGCTTTTTATAAGATGTAACTACTGAAATTTG GAATGTCTGGTGGAACTCGGCATCTCAAATTAAGAATCAATGGANAAGGAACCTTGTGT
Species	Pyrus pyrifolia
Publication	[view all]
Contact	Toshiya Yamamoto
Comment	SNP position in sequence: 220

Contact

Name

Details

Toshiya Yamamoto

First name:	Toshiya
Last name:	Yamamoto
Institution:	National Institute of Fruit Tree Science, Graduate School of Life and Environmental Sciences, University of Tsukuba
Address:	National Institute of Fruit Tree Science, 2-1 Fujimoto, Tsukuba, Ibaraki 305-8605, Japan
Country:	Japan
Email:	toshiya@affrc.go.jp
Last update:	Apr 2014

Publications


Year	Publication
2014	Terakami S, Nishitani C, Kunihisa M, Shirasawa K, Sato S, Tabata S, Kurita K, Kanamori H, Katayose Y, Takada N, Saito T, Yamamoto T. Transcriptome-based single nucleotide polymorphism markers for genome mapping in Japanese pear (Pyrus pyrifolia Nakai). Tree genetics & genomes. 2014; 10(4):853-863.

Map Positions


#	Map Name	Linkage Group	Bin	Position	Locus	MapViewer
1	Pear-integrated_consensus_map-IPCG-2017	LG11	N/A	56.56	JPsnpHou00325	View

Sequence

>JPsnpHou00325 ID=JPsnpHou00325; Name=JPsnpHou00325; organism=Pyrus pyrifolia; type=genetic_marker; length=699bp
CTCCTTGTCTATGACATAACTAAGCGGCCAACTTTTGAGAATGTCCAAAG
GTGGCTCCGTGAGTTGAGGGACCATGCAGATTCGAACATTGTTATCATGA
TGACTGGAAACAAGTCTGACTTGATCAATCTCCGAGCTGTTTCAGAGGAT
GATGGTCAGTCCTTGGCTGAGAGGGAAGGTCTCTCATTTCTCGAGACATC
AGCACTGGAAGCAACCAACrTTGAGAAGGCATTTCAAACTATTCTAACCG
AGATCTACCATATTGTCAGCAAAAAnGCACTGGCAGCTCAAGAAGCAGTC
TCAACTACCCTACCTGGTCAAGGAACCACCATCGACGTTAGTGATGCTTC
TGGGAATACAAACAAGAGAGGTTGCTGCTCGACATAAAAGATGACACACG
TAGGGGGAAGGAGGGGAATTATTTTGCTGGATGCCAGCTCTTTTGATTTT
TCTCTTTTTAGTTCTTTTTTCTGGTGACAGGGAAGCATGTAGAATACAGT
TTTACTTCGACGATTTGTGGTAAGGAAGTTTGTGAAAATTATAATGACAG
TAGTATCGGTACATTTTGAGGGCCTGCTTTTACATCCGATGCACCGTTTT
GTATATGTTGCTTTTTATAAGATGTAACTACTGAAATTTGGAATGTCTGG
TGGAACTCGGCATCTCAAATTAAGAATCAATGGANAAGGAACCTTGTGT