JPsnpHou00632, JPsnpHou00632 (genetic_marker) Pyrus pyrifolia

Marker Overview


Name	JPsnpHou00632
dbSNP ID	N/A
Type	SNP
SNP Alleles	T/C
5' Flanking Sequence	GACACGCCATCTGTGGGACATTGACTCCAGGGCATGATGCTGTCCAAAAGGTGACATTAG TCCCTCGTGGTCAGGCTCGGGGTCTTACGTGGTTTATTCCTGCAGATGATCCTACCTTGA TCTCCAAGCAGCAACTATTTGCAAGAATTGTTGGCGGGCTTGG
3' Flanking Sequence	GGTAGAGCTGCAGAGGAAGTGATCTTTGGTGAGCCTGAGGTGACAACAGGTGCAGCnGGT GATTTGCAGCAGATCACTGGTTTGGCCAAACAGATGGTTACCACCTTCGGAATGTCTGAT ATTGGACCGTGGTCATTGATGGACGCGTCTCAGAGCGGTGAnGTCATTATGAGAATGATG GCAAGGAACTCAATGTCAGAAAAGCTTGCTGAAGACATTGATTTAGCTATTAAGAGATTn TCGGATGAAGCATATGAGATTGCGTTGACCCACATAAGAAACAACCGCGAAGCCATTGAC AAGATCGTGGAGGTCCTTCTTGAGAAGGAAACAATGACCGGAGATGAATTCCGGGCAATC TTGTCCGAATTCGTTGAAATCCCAGTTGAAAACCGGGTCCCTGCTGCAGTTCCATCACCA GTGGCTGTTTAGATAGTGTAACTCATACCGTCATCAACACTCGGCTAAACTTCTATAACT GGTAAAAATGTATAAAAGCTGTTATTTTTTTAAATCACATGTAAAGTGTTGTAATGTGAT GACCAAATATACTTGGGCCTTTGGTTTCTTCTGTGAAAATCCCTCCTGATTTTTAATCTC TACTTCTGGACTTTGTAAACTCCATTGAAGACAGGCAGATGGCGCTTACTACAATGACGA AATATAATTA
Species	Pyrus pyrifolia
Publication	[view all]
Contact	Toshiya Yamamoto
Comment	SNP position in sequence: 164

Contact

Name

Details

Toshiya Yamamoto

First name:	Toshiya
Last name:	Yamamoto
Institution:	National Institute of Fruit Tree Science, Graduate School of Life and Environmental Sciences, University of Tsukuba
Address:	National Institute of Fruit Tree Science, 2-1 Fujimoto, Tsukuba, Ibaraki 305-8605, Japan
Country:	Japan
Email:	toshiya@affrc.go.jp
Last update:	Apr 2014

Publications


Year	Publication
2014	Terakami S, Nishitani C, Kunihisa M, Shirasawa K, Sato S, Tabata S, Kurita K, Kanamori H, Katayose Y, Takada N, Saito T, Yamamoto T. Transcriptome-based single nucleotide polymorphism markers for genome mapping in Japanese pear (Pyrus pyrifolia Nakai). Tree genetics & genomes. 2014; 10(4):853-863.

Map Positions


#	Map Name	Linkage Group	Bin	Position	Locus	MapViewer
1	Pear-integrated_consensus_map-IPCG-2017	LG17	N/A	220.3	JPsnpHou00632	View

Sequence

>JPsnpHou00632 ID=JPsnpHou00632; Name=JPsnpHou00632; organism=Pyrus pyrifolia; type=genetic_marker; length=834bp
GACACGCCATCTGTGGGACATTGACTCCAGGGCATGATGCTGTCCAAAAG
GTGACATTAGTCCCTCGTGGTCAGGCTCGGGGTCTTACGTGGTTTATTCC
TGCAGATGATCCTACCTTGATCTCCAAGCAGCAACTATTTGCAAGAATTG
TTGGCGGGCTTGGyGGTAGAGCTGCAGAGGAAGTGATCTTTGGTGAGCCT
GAGGTGACAACAGGTGCAGCnGGTGATTTGCAGCAGATCACTGGTTTGGC
CAAACAGATGGTTACCACCTTCGGAATGTCTGATATTGGACCGTGGTCAT
TGATGGACGCGTCTCAGAGCGGTGAnGTCATTATGAGAATGATGGCAAGG
AACTCAATGTCAGAAAAGCTTGCTGAAGACATTGATTTAGCTATTAAGAG
ATTnTCGGATGAAGCATATGAGATTGCGTTGACCCACATAAGAAACAACC
GCGAAGCCATTGACAAGATCGTGGAGGTCCTTCTTGAGAAGGAAACAATG
ACCGGAGATGAATTCCGGGCAATCTTGTCCGAATTCGTTGAAATCCCAGT
TGAAAACCGGGTCCCTGCTGCAGTTCCATCACCAGTGGCTGTTTAGATAG
TGTAACTCATACCGTCATCAACACTCGGCTAAACTTCTATAACTGGTAAA
AATGTATAAAAGCTGTTATTTTTTTAAATCACATGTAAAGTGTTGTAATG
TGATGACCAAATATACTTGGGCCTTTGGTTTCTTCTGTGAAAATCCCTCC
TGATTTTTAATCTCTACTTCTGGACTTTGTAAACTCCATTGAAGACAGGC
AGATGGCGCTTACTACAATGACGAAATATAATTA