JPsnpHou00421, JPsnpHou00421 (genetic_marker) Pyrus pyrifolia

Marker Overview


Name	JPsnpHou00421
dbSNP ID	N/A
Type	SNP
SNP Alleles	A/G
5' Flanking Sequence	GCGGGCGCCAAGGGTGAGAGGCGGTCTCTCCCAAATGCTTCAGTTATGATTCATCAGCCT TCAGGCGGGTACAGCGGACAAGCAAAAGATATGACAATTCACACGAAGCAGATGGTTCGT GTCTGGGATTCCCTTAATGCGTTGTACTCGAAGCATAC
3' Flanking Sequence	GGGCAACCAGTAGATGTAGTTGAGAAGAATATGGACAGGGATAATTTTATGACCCCAGAA GAGGCAAAGGCATTCGGAATCATTGATGAGGTGATTGATGAAAGACCAATGGCTCTGGTG ACTGATGCTGTTGCCAATGAAGGCAAAGAAAAGGATAAAAGTTCAAAGTAGGATCAGAGA TTTAGGTCTCAGTGAGAAACCATCTCTCCTTTTTAGTTTGCAATTGAACTCCnCAGAATT ATATTTCTCATGTGTCGGTCCGTCCCGGAAGTTAACATGATTTGTTTCTCCCCTTAGCAT TCATTTGGAATTCAGTATTTTCATAAAAAAGTTCTATCACTTACAATCTTCGACTTTTGA GCGATGAGAAAAAGAATGTTGATACAGACTTTATTGGCGGGAGCAGGTAAACGCTCTAAG CCACTTAATATTGTATCCCTTCTTAATTTTTTCTTCTACATATTTTGCTTATATATCCTA GTTG
Species	Pyrus pyrifolia
Publication	[view all]
Contact	Toshiya Yamamoto
Comment	SNP position in sequence: 159

Contact

Name

Details

Toshiya Yamamoto

First name:	Toshiya
Last name:	Yamamoto
Institution:	National Institute of Fruit Tree Science, Graduate School of Life and Environmental Sciences, University of Tsukuba
Address:	National Institute of Fruit Tree Science, 2-1 Fujimoto, Tsukuba, Ibaraki 305-8605, Japan
Country:	Japan
Email:	toshiya@affrc.go.jp
Last update:	Apr 2014

Publications


Year	Publication
2014	Terakami S, Nishitani C, Kunihisa M, Shirasawa K, Sato S, Tabata S, Kurita K, Kanamori H, Katayose Y, Takada N, Saito T, Yamamoto T. Transcriptome-based single nucleotide polymorphism markers for genome mapping in Japanese pear (Pyrus pyrifolia Nakai). Tree genetics & genomes. 2014; 10(4):853-863.

Map Positions


#	Map Name	Linkage Group	Bin	Position	Locus	MapViewer
1	Pear-integrated_consensus_map-IPCG-2017	LG16	N/A	0	JPsnpHou00421	View

Sequence

>JPsnpHou00421 ID=JPsnpHou00421; Name=JPsnpHou00421; organism=Pyrus pyrifolia; type=genetic_marker; length=643bp
GCGGGCGCCAAGGGTGAGAGGCGGTCTCTCCCAAATGCTTCAGTTATGAT
TCATCAGCCTTCAGGCGGGTACAGCGGACAAGCAAAAGATATGACAATTC
ACACGAAGCAGATGGTTCGTGTCTGGGATTCCCTTAATGCGTTGTACTCG
AAGCATACrGGGCAACCAGTAGATGTAGTTGAGAAGAATATGGACAGGGA
TAATTTTATGACCCCAGAAGAGGCAAAGGCATTCGGAATCATTGATGAGG
TGATTGATGAAAGACCAATGGCTCTGGTGACTGATGCTGTTGCCAATGAA
GGCAAAGAAAAGGATAAAAGTTCAAAGTAGGATCAGAGATTTAGGTCTCA
GTGAGAAACCATCTCTCCTTTTTAGTTTGCAATTGAACTCCnCAGAATTA
TATTTCTCATGTGTCGGTCCGTCCCGGAAGTTAACATGATTTGTTTCTCC
CCTTAGCATTCATTTGGAATTCAGTATTTTCATAAAAAAGTTCTATCACT
TACAATCTTCGACTTTTGAGCGATGAGAAAAAGAATGTTGATACAGACTT
TATTGGCGGGAGCAGGTAAACGCTCTAAGCCACTTAATATTGTATCCCTT
CTTAATTTTTTCTTCTACATATTTTGCTTATATATCCTAGTTG