JPsnpHou00581, JPsnpHou00581 (genetic_marker) Pyrus pyrifolia

Marker Overview


Name	JPsnpHou00581
dbSNP ID	N/A
Type	SNP
SNP Alleles	T/C
5' Flanking Sequence	CGGCTGAGATTTCATGGGTAAGTGTTGGTTTTTGAAATTAATCAAGAAAGTTGAGTCCTT TGTGGAATTAATAAGAGATTCGACGGTGCAAAAATTCGATAGCAGATCATCAAAAAGTAC TACTTGCTAATGTTAATCTTTGTTGTTGTTCCAAACA
3' Flanking Sequence	GAAGATCATTTGTACCAATGTAATTAGACTATGTTGTTGTTTTTTGATGTTCTTATCTTT GTGTCATGTGGGATTGTTGTTATAGAGGGGTCGGGTTGAAAAATTAATGGTGGTCTGAnG GTTCTCTGCAATTTGTGGAAAGTTGAAGGAGTGGTTGGCAAAGGCAGACGTGGTTTGATC CAACAATGGAGATTGCAGAGGTTGCTGCTTATCATCATAAAATTAGAGAGCATTTTATTG ATTAGTAAATGCTAAATATCATGTTATTATTTTAATTTTTTTTATTTACGAAGCAATTAT TTTTGCAGATTCTCTCCTATTATTTGTAAGTGTTAATTTATGTGCTAGTTAATTTATAGT AAATGAAATTATTCATAAGCTGTTTACCTAAAAAAAAAAAAAAAC
Species	Pyrus pyrifolia
Publication	[view all]
Contact	Toshiya Yamamoto
Comment	SNP position in sequence: 158

Contact

Name

Details

Toshiya Yamamoto

First name:	Toshiya
Last name:	Yamamoto
Institution:	National Institute of Fruit Tree Science, Graduate School of Life and Environmental Sciences, University of Tsukuba
Address:	National Institute of Fruit Tree Science, 2-1 Fujimoto, Tsukuba, Ibaraki 305-8605, Japan
Country:	Japan
Email:	toshiya@affrc.go.jp
Last update:	Apr 2014

Publications


Year	Publication
2014	Terakami S, Nishitani C, Kunihisa M, Shirasawa K, Sato S, Tabata S, Kurita K, Kanamori H, Katayose Y, Takada N, Saito T, Yamamoto T. Transcriptome-based single nucleotide polymorphism markers for genome mapping in Japanese pear (Pyrus pyrifolia Nakai). Tree genetics & genomes. 2014; 10(4):853-863.

Map Positions


#	Map Name	Linkage Group	Bin	Position	Locus	MapViewer
1	Pear-integrated_consensus_map-IPCG-2017	LG10	N/A	104.27	JPsnpHou00581	View

Sequence

>JPsnpHou00581 ID=JPsnpHou00581; Name=JPsnpHou00581; organism=Pyrus pyrifolia; type=genetic_marker; length=563bp
CGGCTGAGATTTCATGGGTAAGTGTTGGTTTTTGAAATTAATCAAGAAAG
TTGAGTCCTTTGTGGAATTAATAAGAGATTCGACGGTGCAAAAATTCGAT
AGCAGATCATCAAAAAGTACTACTTGCTAATGTTAATCTTTGTTGTTGTT
CCAAACAyGAAGATCATTTGTACCAATGTAATTAGACTATGTTGTTGTTT
TTTGATGTTCTTATCTTTGTGTCATGTGGGATTGTTGTTATAGAGGGGTC
GGGTTGAAAAATTAATGGTGGTCTGAnGGTTCTCTGCAATTTGTGGAAAG
TTGAAGGAGTGGTTGGCAAAGGCAGACGTGGTTTGATCCAACAATGGAGA
TTGCAGAGGTTGCTGCTTATCATCATAAAATTAGAGAGCATTTTATTGAT
TAGTAAATGCTAAATATCATGTTATTATTTTAATTTTTTTTATTTACGAA
GCAATTATTTTTGCAGATTCTCTCCTATTATTTGTAAGTGTTAATTTATG
TGCTAGTTAATTTATAGTAAATGAAATTATTCATAAGCTGTTTACCTAAA
AAAAAAAAAAAAC