JPsnpHou00549, JPsnpHou00549 (genetic_marker) Pyrus pyrifolia

Marker Overview


Name	JPsnpHou00549
dbSNP ID	N/A
Type	SNP
SNP Alleles	A/G
5' Flanking Sequence	CATCATTTTCTGCCACCCTAGTACAAGATGCTTTGACACTAGGTAAAGATGTTATTCCCA AGTACTCTTTTGGTTGCATTAATTCCATCTCGGGTGGGTCGATCCCATCCCAAGGGCTAT TGGGTCTAGGTCGCGGATCCATGTCATTACTCTCAC
3' Flanking Sequence	GACCGGGTCACTCTACTCCGGCGTGTTTTCGTATTGTTTACCAAGCTTCAAATCTTACTA CTTTTCCGGGTCACTCAAGCTTGGACCGGCTGGCCAACCCAAGTCTATCCGGACCACCCC ACTTCTAAGAAACCCCCGCCGGCCCTCACTGTACTATGTAAACCTGACCGGAATCAGTGT GGGCCGGGTTCTTGTACCCATTGCACCGGAGCTTCTAGCATTCAACCCAAACACCGGGGC CGGAACCATCATAGACTCGGGCACGGTCATAACCCGATTTGTGCAACCCGTCTACATGGC ACTCCGGGACAATTTAGAAACACTGAACGGACCATTTTCGTCATTAGGGGCCTTTGACAC TTGTTTTTCTGTCCACCAATGAAGTTGTGGCCCCAGCCATCACGTTGCAATTCACGGGGT T
Species	Pyrus pyrifolia
Publication	[view all]
Contact	Toshiya Yamamoto
Comment	SNP position in sequence: 157

Contact

Name

Details

Toshiya Yamamoto

First name:	Toshiya
Last name:	Yamamoto
Institution:	National Institute of Fruit Tree Science, Graduate School of Life and Environmental Sciences, University of Tsukuba
Address:	National Institute of Fruit Tree Science, 2-1 Fujimoto, Tsukuba, Ibaraki 305-8605, Japan
Country:	Japan
Email:	toshiya@affrc.go.jp
Last update:	Apr 2014

Publications


Year	Publication
2014	Terakami S, Nishitani C, Kunihisa M, Shirasawa K, Sato S, Tabata S, Kurita K, Kanamori H, Katayose Y, Takada N, Saito T, Yamamoto T. Transcriptome-based single nucleotide polymorphism markers for genome mapping in Japanese pear (Pyrus pyrifolia Nakai). Tree genetics & genomes. 2014; 10(4):853-863.

Map Positions


#	Map Name	Linkage Group	Bin	Position	Locus	MapViewer
1	Pear-integrated_consensus_map-IPCG-2017	LG15	N/A	207.04	JPsnpHou00549	View

Sequence

>JPsnpHou00549 ID=JPsnpHou00549; Name=JPsnpHou00549; organism=Pyrus pyrifolia; type=genetic_marker; length=578bp
CATCATTTTCTGCCACCCTAGTACAAGATGCTTTGACACTAGGTAAAGAT
GTTATTCCCAAGTACTCTTTTGGTTGCATTAATTCCATCTCGGGTGGGTC
GATCCCATCCCAAGGGCTATTGGGTCTAGGTCGCGGATCCATGTCATTAC
TCTCACrGACCGGGTCACTCTACTCCGGCGTGTTTTCGTATTGTTTACCA
AGCTTCAAATCTTACTACTTTTCCGGGTCACTCAAGCTTGGACCGGCTGG
CCAACCCAAGTCTATCCGGACCACCCCACTTCTAAGAAACCCCCGCCGGC
CCTCACTGTACTATGTAAACCTGACCGGAATCAGTGTGGGCCGGGTTCTT
GTACCCATTGCACCGGAGCTTCTAGCATTCAACCCAAACACCGGGGCCGG
AACCATCATAGACTCGGGCACGGTCATAACCCGATTTGTGCAACCCGTCT
ACATGGCACTCCGGGACAATTTAGAAACACTGAACGGACCATTTTCGTCA
TTAGGGGCCTTTGACACTTGTTTTTCTGTCCACCAATGAAGTTGTGGCCC
CAGCCATCACGTTGCAATTCACGGGGTT