JPsnpHou00621, JPsnpHou00621 (genetic_marker) Pyrus pyrifolia

Marker Overview


Name	JPsnpHou00621
dbSNP ID	N/A
Type	SNP
SNP Alleles	T/C
5' Flanking Sequence	CTTGGCTGTATATTGGCGGAGTTATGCTCTGGAGAAGTGCTCTTTCCAAATGACGGGGTT GTAATGATCCTTGCGCGCATGATTGGAATGCTTGGTCCTAT
3' Flanking Sequence	GATCTGGATATGTTAGTGAAAGGTCAGGAGACCGATAAGTACTTCACAAACGAGTTAGAT CTTTACCACATAAATGAGGAAACAAGCCAACTGGAATACATAATCCCAGAGGAGTCCTCC TTGGAGAATCACCTGCAAGTAACCGACATTGGGTTTATCGACTTTGTCAAAAGCCTGCTT GAAGTCAATCCTGAGAGACGCCCAACCGCAAGGGAAGCACTAGAGCACCCATGGCTTTCC TACACATATGAATGAACTCATGGGGTACGTAGCAGTTCTCCTTGTGGGTTCATTTGTAAA TTGAGTTTTGAAGAGCAATTTTCGAACCACGATCTGCATCCGGTGAACACTGGACTGCGA TGCGCTTCGGATTTCAGTTTTGGTTTCGTGTACATGGCCTTGTTTTGCATTGTCTATCGT ATATTCTCTCGTTCTGATTTAACATATTnATACTTTTCTTGTTCAAAAAATGTAATGTTT GAGTGGCTAGGTCATACAAATGTATAAAACGTTCTGCATTAATATGGTGTTGCTTTCTGA TTCACTTATTCTAAA
Species	Pyrus pyrifolia
Publication	[view all]
Contact	Toshiya Yamamoto
Comment	SNP position in sequence: 102

Contact

Name

Details

Toshiya Yamamoto

First name:	Toshiya
Last name:	Yamamoto
Institution:	National Institute of Fruit Tree Science, Graduate School of Life and Environmental Sciences, University of Tsukuba
Address:	National Institute of Fruit Tree Science, 2-1 Fujimoto, Tsukuba, Ibaraki 305-8605, Japan
Country:	Japan
Email:	toshiya@affrc.go.jp
Last update:	Apr 2014

Publications


Year	Publication
2014	Terakami S, Nishitani C, Kunihisa M, Shirasawa K, Sato S, Tabata S, Kurita K, Kanamori H, Katayose Y, Takada N, Saito T, Yamamoto T. Transcriptome-based single nucleotide polymorphism markers for genome mapping in Japanese pear (Pyrus pyrifolia Nakai). Tree genetics & genomes. 2014; 10(4):853-863.

Map Positions


#	Map Name	Linkage Group	Bin	Position	Locus	MapViewer
1	Pear-integrated_consensus_map-IPCG-2017	LG1	N/A	104.36	JPsnpHou00621	View

Sequence

>JPsnpHou00621 ID=JPsnpHou00621; Name=JPsnpHou00621; organism=Pyrus pyrifolia; type=genetic_marker; length=657bp
CTTGGCTGTATATTGGCGGAGTTATGCTCTGGAGAAGTGCTCTTTCCAAA
TGACGGGGTTGTAATGATCCTTGCGCGCATGATTGGAATGCTTGGTCCTA
TyGATCTGGATATGTTAGTGAAAGGTCAGGAGACCGATAAGTACTTCACA
AACGAGTTAGATCTTTACCACATAAATGAGGAAACAAGCCAACTGGAATA
CATAATCCCAGAGGAGTCCTCCTTGGAGAATCACCTGCAAGTAACCGACA
TTGGGTTTATCGACTTTGTCAAAAGCCTGCTTGAAGTCAATCCTGAGAGA
CGCCCAACCGCAAGGGAAGCACTAGAGCACCCATGGCTTTCCTACACATA
TGAATGAACTCATGGGGTACGTAGCAGTTCTCCTTGTGGGTTCATTTGTA
AATTGAGTTTTGAAGAGCAATTTTCGAACCACGATCTGCATCCGGTGAAC
ACTGGACTGCGATGCGCTTCGGATTTCAGTTTTGGTTTCGTGTACATGGC
CTTGTTTTGCATTGTCTATCGTATATTCTCTCGTTCTGATTTAACATATT
nATACTTTTCTTGTTCAAAAAATGTAATGTTTGAGTGGCTAGGTCATACA
AATGTATAAAACGTTCTGCATTAATATGGTGTTGCTTTCTGATTCACTTA
TTCTAAA