Pav-HB-02-19

Haplotype Block Overview

Name	Pav-HB-02-19
Species	Prunus avium
Stock Haplotype	[view all 518]
Haplotype	[view all]

Publications


Year	Publication
2019	Vanderzande S, Howard NP, Cai L, Da Silva Linge C, Antanaviciute L, Bink MCAM, Kruisselbrink JW, Bassil N, Gasic K, Iezzoni A, Van de Weg E, Peace C. High-quality, genome-wide SNP genotypic data for pedigreed germplasm of the diploid outbreeding species apple, peach, and sweet cherry through a common workflow. PloS one. 2019; 14(6):e0210928.

Stock Haplotype

Name	Haplotype
Summit	4
Lambert	2 4
Regina	4 5
Ambrunes	4
Lapins	4
Stella	2 4
Sweetheart	2 4
Van	2 4
Schneiders	4 5
Bing	2 3
Rainier	2 4
5.18.25-001	2 4
5.3.1-001	2 5
5.3.1-002	2 3
Benton	4
Brooks	2 4
Cashmere	2 3
Chelan	4
Chinook	2 3
Cowiche	4
Gil Peck	2 4
Glacier	3 4
Kiona	2 3
Mildew Immune Mazzard #17	4 5
Mildew Immune Mazzard #23	4
Newstar	4
NY 54	2 4
PMR-1	2 4
Sato Nashiki	2
Schmidt	7
Selah	3 4
Tieton	2 4
Ulster	2 4
Vic	3 7
Windsor	4 5
23_1_47	2
23_2_46	2 4
23_3_24	2
23_3_28	2 4
23_3_40	2
23_5_17	2 4
23_8_24	2 4
23_8_45	2 4
4.10.19-001	2 4
4.10.19-002	4
4.10.19-003	2 4
4.10.19-004	4
4.10.19-005	4
4.10.19-006	4
4.10.19-008	2 4
4.10.19-009	4
4.10.19-010	4
4.10.19-011	4
4.10.2-001	4
4.10.2-002	4
4.10.2-004	4
4.10.2-005	4
4.10.2-006	4
4.10.2-008	4
4.10.2-009	4
4.10.2-010	4
4.10.5-001	4
4.10.5-002	4
4.10.5-003	4
4.10.5-004	4
4.10.5-005	4
4.10.5-006	4
4.10.5-015	4
4.10.5-016	4
4.10.5-018	4
4.10.5-019	4
4.10.5-020	4
4.10.5-028	4
4.10.5-029	4
4.10.5-030	3 4
4.16.2-001	3 4
4.18.15-001	4
4.18.15-002	4
4.18.15-003	4
4.18.15-004	4
4.18.15-005	4 5
4.18.15-006	4
4.18.15-007	3 4
4.18.15-009	4
4.18.15-011	4 5
4.18.15-012	4
4.18.15-013	4
4.18.15-014	4 5
4.18.15-015	4
4.18.15-016	4
4.18.15-028	4
4.18.15-030	4
4.18.15-039	4
4.18.15-040	4 5
4.18.15-043	4 5
4.18.2-005	4
4.18.2-007	4
4.18.2-008	4
4.18.2-010	4
4.18.2-015	4
4.18.2-016	4
4.18.2-018	4
4.18.2-019	4
4.18.2-020	4
4.18.2-024	4
4.18.2-027	4
4.18.2-028	4
5.12.5-005	2 4
5.12.5-007	2 4
5.12.5-008	2 4
5.12.5-009	2 4
5.12.5-010	3 4
5.12.5-011	3 4
5.12.5-019	2
5.12.5-020	3 4
5.12.5-021	2 4
5.12.5-022	3 4
5.14.15-003	2 5
5.14.15-004	4 5
5.14.15-005	4 5
5.14.15-006	4
5.14.15-007	4 5
5.14.15-013	4 5
5.14.15-014	4
5.14.15-015	2 4
5.14.15-016	2 5
5.14.15-017	4 5
5.14.15-018	4
5.14.15-019	2 5
5.14.15-020	4 5
5.14.23-003	4
5.14.23-004	2 4
5.14.23-006	2 4
5.23.15-001	4
5.23.15-002	4
5.23.2-001	4
5.23.2-002	4
5.23.2-003	4
5.28.15-001	4 5
5.28.15-002	4 5
5.28.15-003	4
5.28.15-004	4
5.28.15-005	4
5.28.15-006	4
5.28.15-007	4
5.28.15-008	4
5.28.15-009	4 5
5.28.15-010	4 5
5.28.15-011	4
5.28.15-012	4 5
5.28.15-013	4 5
5.28.37-001	4
5.28.37-002	4
5.28.37-003	4
5.28.37-004	4
5.28.37-005	4
5.28.37-008	4
5.28.37-009	4
5.28.37-010	4
5.28.37-011	4
5.28.37-012	4
5.4.15-004	3 4
5.4.15-005	2 5
6.14.2-006	2 4
6.14.2-007	4
6.14.2-008	2 4
6.14.2-009	2 4
6.14.2-010	4
6.14.2-011	4
6.14.2-012	2 4
6.14.2-013	4
6.14.2-015	2 4
6.29.49-001	4 5
6.29.49-002	4 5
6.29.49-003	4
6.29.49-005	4 5
6.29.49-007	4
6.29.49-008	4 5
6.30.49-009	2 5
6.30.49-011	2 4
6.30.49-012	2 4
6.30.49-013	2 5
6.30.49-014	2 5
6.30.49-015	2 5
6.30.49-016	2 4
6.30.49-017	2 4
6.31.49-003	2 4
6.31.49-004	4 5
6.31.49-005	4
6.31.49-006	4 5
6.31.49-007	2 4
6.31.49-009	2 5
6.31.49-010	4
6.31.49-011	2 5
6.31.49-012	2 5
6.31.49-013	4
6.31.49-014	4 5
6.31.49-015	4
6.32.49-032	4
6.32.49-033	4 5
6.32.49-034	4
6.32.49-035	2 4
6.32.49-037	2 4
6.32.49-038	2 4
6.32.49-039	4
6.32.49-040	4 5
6.32.49-041	4 5
6.33.49-001	2 5
6.33.49-002	2 5
6.33.49-003	2 5
6.33.49-004	2 5
23-01-11	2
23-02-34	2 4
23-03-13	2
23-03-23	2
23-03-48	2 4
23-03-56	2 4
23-06-04	2
23-06-23	2 4
23-07-26	2 4
23-08-55	2
Dzherlo	2 4
Olympus	2 4
PC 7146-16	2 4
Kordia	3 5
Cristobalina	2 4
Vittoria	3 4
FR20T047	4
FR13T004	2 4
FR13T071	4
FR31T121	4
FR32T087	4
FR32T088	4
FR32T093	2 4
FR20T045	4
FR26T117	2 4
FR29T115	4
PC 9816-005	4
PC 9816-023	2 4
PC 9816-041	2 4
PC 9816-059	2 4
PC 9816-083	2
PC 9816-103	2
PC 9816-105	2 4
PC 9816-106	2
PC 9816-112	2 4
PC 9816-078	2 4
PC 9819-005	2 4
PC 9819-031	4
PC 9819-038	4
PC 9814-025	3 4
PC 9814-078	2
PC 9814-103	2 4
PC 9814-105	2 4
PC 9814-026	2 3
PC 9814-028	3 4
PC 9814-055	3 4
PC 9814-062	3 4
PC 9814-063	2 3
PC 9814-068	2 4
PC 9814-071	3 4
PC 9814-076	2 4
PC 9819-034	2
PC 9816-042	4
Emperor Francis	2
Black Republican	2 4
Krupnoplodnaya	2 4
Early Burlat	3 4
Venus	3 4
Moreau	4
Index	2 4
Sunburst	4
6.14.6-008	4
FR02T062	4
FR02T063	4
5.14.23.001	2 4
6.16.44-005	4
6.23.44-001	4
6.23.44-002	4
6.23.55-006	4
6.23.55-010	4
6.23.6-002	4
6.23.6-003	4
6.16.44-001	4
6.16.44-002	3 4
6.16.44-003	3 4
6.28.44-001	4
6.28.44-002	4
6.4.44-003	2 4
6.4.44-004	2 4
6.4.44-006	2 4
6.4.44-007	2 4
6.4.44-009	2 4
6.4.44-010	2 4
6.4.45-001	2 4
4.3.1-004	2 5
4.3.1-009	3
5.3.1-008	2 5
5.3.1-010	2 5
5.3.1-015	3
5.3.1-016	2 5
5.3.1-017	3
6.30.50-002	2 3
6.14.6-003	4
6.28.45-001	4
FR09T089	2 4
6.12.45-001	3 4
6.12.45-002	4
6.12.45-003	3 4
6.12.45-004	2 4
6.12.45-005	2 4
6.12.45-007	2 4
6.12.45-008	2 4
6.12.45-009	2
6.12.45-010	2 4
6.14.45-001	4
6.14.45-003	4
6.14.45-004	2 4
6.14.45-005	4
6.14.45-006	2 4
6.14.45-007	2 4
6.14.45-008	2 4
6.14.45-009	2 4
6.28.45-002	4
6.14.6-001	2
6.14.6-002	2
6.14.6-004	2 4
6.14.6-005	4
6.14.6-006	2 4
6.14.6-007	2 4
6.14.6-010	2
6.23.6-004	4
6.23.6-005	2 4
6.23.6-007	2 4
6.23.6-008	4
6.23.6-012	2 4
6.28.44-005	2 4
6.28.55-006	4
6.28.55-007	2 4
6.23.6-001	4
6.23.6-006	4
6.23.6-009	4
6.4.44-001	2
6.4.6-001	4
FR04T029	2 4
FR08T074	2 4
6.28.55-002	4
FR01T050	3 4
5.10.25-001	2 4
5.10.25-002	4
5.16.25-002	4
5.16.25-003	2 4
5.16.25-004	2 4
5.16.25-005	2 4
5.16.25-009	2 3
5.16.25-010	2 4
5.16.25-013	3 4
5.18.25-005	2 4
4.3.1-008	3 4
5.3.1-005	4 5
FR09T037	4
6.29.50-001	4
6.29.50-002	4
6.29.50-003	4
6.29.50-004	4
6.29.50-005	4
6.29.50-007	4
6.29.50-008	4
6.30.50-004	2 4
6.30.50-005	2 4
6.31.50-001	2 4
6.31.50-002	4
6.31.50-003	4
6.31.50-004	2 4
6.31.50-005	2 4
6.32.50-001	4
6.32.50-002	4
6.32.50-003	4
6.32.50-004	4
6.32.50-005	4
6.32.50-006	2 4
6.32.50-007	4
6.32.50-008	4
6.33.50-001	2 4
5.10.26-001	4
5.10.26-002	4
5.10.26-003	4
5.10.26-004	4
5.10.26-005	4
5.10.26-007	4
5.10.26-008	4
5.13.26-001	2 4
5.13.26-002	4
5.13.26-003	4
5.13.26-004	4
5.13.26-005	4
5.13.26-006	2 4
5.13.26-007	2 4
5.13.26-009	2 4
5.14.26-001	4
5.14.26-002	4
5.14.26-003	2 4
5.16.26-001	3 4
5.16.26-002	3 4
5.16.26-003	3 4
5.16.40-001	3 4
5.18.26-001	2 4
5.18.26-002	4
FR06T097	2 4
FR07T026	2 4
6.28.44-003	2 4
AA	4
PC 9816-069	4
PC 9816-079	2
PC 9816-096	2 4
PC 9816-104	2 4
PC 9816-114	2 4
PC 9817-097	2
4.18.15-010	4 5
4.18.15-042	4
4.18.15-047	4 5
4.18.15-048	4 5
4.3.1-003	3 4
4.3.1-005	4 5
4.3.1-006	3 5
4.3.1-007	4 5
5.3.1-009	3 5
5.3.1-011	3 5
5.3.1-012	3 4
5.3.1-013	3 4
5.3.1-014	3 5
5.4.15-001	5
5.4.15-002	3 5
5.4.15-003	3 4
FR01T070	4 5
FR49T083	4
5.16.17-003	3 4
5.16.25-006	4
5.16.25-008	4
5.16.25-012	3 4
5.20.6-001	3 4
6.16.44-008	3
6.4.45-003	2 4
6.4.6-004	3 4
6.4.6-006	3 4
6.4.6-007	4
6.4.6-008	4
6.4.6-009	4
5.16.17-001	3 4
5.16.17-004	4
6.14.17-001	2 4
6.14.17-002	4
6.14.17-003	4
6.14.17-004	4
6.14.17-005	2 4
FR02T024	4
4.14.17-001	4
5.13.26-008	2 4
6.28.44-004	4
4.3.1-001	3 4
5.3.1-007	3 4
5.3.1-018	4 5
5.10.40-001	3 4
5.10.40-002	3 4
5.10.40-003	4
5.10.40-004	4
5.10.40-005	3 4
5.10.40-007	3 4
5.10.40-008	4
5.10.40-009	4
5.10.40-010	4
5.10.40-011	4
5.10.40-012	3 4
5.10.40-013	3 4
5.10.40-014	3 4
5.10.40-015	4
5.10.40-016	3 4
5.10.40-017	3 4
5.13.40-002	4
5.13.40-003	2 4
5.13.40-004	3 4
5.16.40-003	3 4
5.16.40-004	3 4
6.30.50-001	2 3
6.30.50-003	2 4
6.10.55-001	3 4
6.10.55-002	3 4
6.10.55-003	4
6.10.55-004	4
6.10.55-005	3 4
6.10.55-006	4
6.10.55-007	4
6.10.55-008	3 4
6.10.55-009	3 4
6.10.55-010	4
6.16.55-001	4
6.16.55-002	3 4
6.23.17-001	3 4
6.23.55-002	4
6.23.55-005	3 4
6.23.55-007	4
6.23.55-008	3 4
6.28.55-001	3 4
6.28.55-003	3 4
6.28.55-004	4
6.28.55-005	3 4
5.13.40-001	4
5.16.25-001	3 4
5.18.25-004	2 4
5.3.1-006	2 4
6.16.44-004	2 3
6.16.44-006	3 4
6.16.44-007	4
6.16.44-009	2 3
6.23.17-003	2 4
6.23.17-004	4
Bertiolle	4
Napoleon	2 3

Map Positions


Haplotype Block	Map Name	Linkage Group	Start	Stop
Pav-HB-02-19	Sweet Cherry-RosBREED-1.6K-2019	2	69.95	70.3

Projects


Project Name
RosBREED_Sweet_Cherry_CRS_Haplotype_2020

Haplotypes

Marker	2	3	4	5	6	7	8	9
RosBREED_snp_sweet_cherry_Pp2_23414368	B	A	A	A	-	-	B	A
RosBREED_snp_sweet_cherry_Pp2_23507712	A	A	A	B	A	A	A	A
RosBREED_snp_sweet_cherry_Pp2_23602708	A	B	A	A	B	A	B	-

Alignments

Feature Name	Type	Location	Analysis
Pp02	chromosome	Pp02:29793996..29943583.	Prunus persica Whole Genome Assembly v2.0 & Annotation v2.1 (v2.0.a1)