Pav-HB-02-18

Haplotype Block Overview

Name	Pav-HB-02-18
Species	Prunus avium
Stock Haplotype	[view all 518]
Haplotype	[view all]

Publications


Year	Publication
2019	Vanderzande S, Howard NP, Cai L, Da Silva Linge C, Antanaviciute L, Bink MCAM, Kruisselbrink JW, Bassil N, Gasic K, Iezzoni A, Van de Weg E, Peace C. High-quality, genome-wide SNP genotypic data for pedigreed germplasm of the diploid outbreeding species apple, peach, and sweet cherry through a common workflow. PloS one. 2019; 14(6):e0210928.

Stock Haplotype

Name	Haplotype
Summit	7
Lambert	3 6
Regina	3 7
Ambrunes	3
Lapins	3 7
Stella	3 6
Sweetheart	6 7
Van	6 7
Schneiders	3
Bing	3 6
Rainier	6 7
5.18.25-001	2 7
5.3.1-001	3 6
5.3.1-002	3 6
Benton	3
Brooks	3 6
Cashmere	3 6
Chelan	3
Chinook	3 6
Cowiche	3
Gil Peck	3 6
Glacier	3
Kiona	3 6
Mildew Immune Mazzard #17	7
Mildew Immune Mazzard #23	7
Newstar	3 7
NY 54	2 3
PMR-1	3 6
Sato Nashiki	2 6
Schmidt	11
Selah	3
Tieton	3 6
Ulster	3 6
Vic	11 3
Windsor	3 7
23_1_47	2 3
23_2_46	3
23_3_24	2
23_3_28	2 3
23_3_40	2 3
23_5_17	2 3
23_8_24	2 3
23_8_45	3
4.10.19-001	3 6
4.10.19-002	3 7
4.10.19-003	3 6
4.10.19-004	3
4.10.19-005	3 7
4.10.19-006	3 7
4.10.19-008	6 7
4.10.19-009	3 7
4.10.19-010	3 7
4.10.19-011	3
4.10.2-001	3 7
4.10.2-002	3
4.10.2-004	3
4.10.2-005	3
4.10.2-006	3 7
4.10.2-008	3 7
4.10.2-009	3
4.10.2-010	3
4.10.5-001	3 7
4.10.5-002	3 7
4.10.5-003	3 7
4.10.5-004	3 7
4.10.5-005	3 7
4.10.5-006	3 7
4.10.5-015	3
4.10.5-016	3
4.10.5-018	3
4.10.5-019	3 7
4.10.5-020	3
4.10.5-028	3 7
4.10.5-029	3
4.10.5-030	3 7
4.16.2-001	3
4.18.15-001	7
4.18.15-002	3 7
4.18.15-003	3 7
4.18.15-004	7
4.18.15-005	7
4.18.15-006	7
4.18.15-007	3
4.18.15-009	3 7
4.18.15-011	3 7
4.18.15-012	7
4.18.15-013	3 7
4.18.15-014	3 7
4.18.15-015	3 7
4.18.15-016	7
4.18.15-028	3 7
4.18.15-030	3 7
4.18.15-039	7
4.18.15-040	3
4.18.15-043	3
4.18.2-005	3
4.18.2-007	3 7
4.18.2-008	3
4.18.2-010	3 7
4.18.2-015	3 7
4.18.2-016	3 7
4.18.2-018	3 7
4.18.2-019	3
4.18.2-020	3 7
4.18.2-024	3 7
4.18.2-027	3
4.18.2-028	3 7
5.12.5-005	3 6
5.12.5-007	3 6
5.12.5-008	3 6
5.12.5-009	3 6
5.12.5-010	3
5.12.5-011	3
5.12.5-019	6
5.12.5-020	3
5.12.5-021	3 6
5.12.5-022	3
5.14.15-003	3 6
5.14.15-004	3 7
5.14.15-005	3 7
5.14.15-006	7
5.14.15-007	3 7
5.14.15-013	3 7
5.14.15-014	7
5.14.15-015	6 7
5.14.15-016	3 6
5.14.15-017	3 7
5.14.15-018	7
5.14.15-019	3 6
5.14.15-020	3 7
5.14.23-003	3 7
5.14.23-004	3 6
5.14.23-006	3 6
5.23.15-001	3
5.23.15-002	3 7
5.23.2-001	3
5.23.2-002	3
5.23.2-003	3
5.28.15-001	3
5.28.15-002	3
5.28.15-003	3 7
5.28.15-004	3 7
5.28.15-005	3 7
5.28.15-006	3 7
5.28.15-007	3 7
5.28.15-008	3 7
5.28.15-009	3
5.28.15-010	3
5.28.15-011	3 7
5.28.15-012	3
5.28.15-013	3
5.28.37-001	3 7
5.28.37-002	3 7
5.28.37-003	3 7
5.28.37-004	3 7
5.28.37-005	3 7
5.28.37-008	3 7
5.28.37-009	3 7
5.28.37-010	3 7
5.28.37-011	3 7
5.28.37-012	3
5.4.15-004	3 7
5.4.15-005	3 6
6.14.2-006	3 6
6.14.2-007	3 7
6.14.2-008	3 6
6.14.2-009	6 7
6.14.2-010	3 7
6.14.2-011	3 7
6.14.2-012	3 6
6.14.2-013	7
6.14.2-015	3 6
6.29.49-001	3 7
6.29.49-002	3 7
6.29.49-003	3 7
6.29.49-005	7
6.29.49-007	7
6.29.49-008	7
6.30.49-009	6 7
6.30.49-011	6 7
6.30.49-012	6 7
6.30.49-013	6 7
6.30.49-014	6 7
6.30.49-015	6 7
6.30.49-016	6 7
6.30.49-017	6 7
6.31.49-003	6 7
6.31.49-004	7
6.31.49-005	7
6.31.49-006	7
6.31.49-007	6 7
6.31.49-009	6 7
6.31.49-010	7
6.31.49-011	6 7
6.31.49-012	6 7
6.31.49-013	7
6.31.49-014	7
6.31.49-015	7
6.32.49-032	7
6.32.49-033	7
6.32.49-034	7
6.32.49-035	6 7
6.32.49-037	6 7
6.32.49-038	7
6.32.49-039	7
6.32.49-040	7
6.32.49-041	7
6.33.49-001	6 7
6.33.49-002	6 7
6.33.49-003	6 7
6.33.49-004	6 7
23-01-11	2
23-02-34	2 3
23-03-13	2
23-03-23	2 3
23-03-48	2 3
23-03-56	2 3
23-06-04	2 3
23-06-23	3
23-07-26	3
23-08-55	2 3
Dzherlo	2 7
Olympus	6 7
PC 7146-16	3 6
Kordia	3
Cristobalina	2 3
Vittoria	3 7
FR20T047	3
FR13T004	3 6
FR13T071	3
FR31T121	7
FR32T087	7
FR32T088	7
FR32T093	6 7
FR20T045	3 7
FR26T117	3 6
FR29T115	7
PC 9816-005	3 7
PC 9816-023	3 6
PC 9816-041	3 6
PC 9816-059	3 6
PC 9816-083	6
PC 9816-103	6
PC 9816-105	3 6
PC 9816-106	6
PC 9816-112	6 7
PC 9816-078	6 7
PC 9819-005	3 6
PC 9819-031	3 7
PC 9819-038	3 7
PC 9814-025	3
PC 9814-078	6
PC 9814-103	3 6
PC 9814-105	3 6
PC 9814-026	3 6
PC 9814-028	3
PC 9814-055	3
PC 9814-062	3
PC 9814-063	3 6
PC 9814-068	3 6
PC 9814-071	3
PC 9814-076	3 6
PC 9819-034	6
PC 9816-042	3 7
Emperor Francis	2 3
Black Republican	6 7
Krupnoplodnaya	2 3
Early Burlat	3
Venus	3 7
Moreau	3
Index	3 6
Sunburst	3 7
6.14.6-008	3 7
FR02T062	3 7
FR02T063	3 7
5.14.23.001	3 6
6.16.44-005	3
6.23.44-001	3
6.23.44-002	3
6.23.55-006	3
6.23.55-010	3
6.23.6-002	3
6.23.6-003	3
6.16.44-001	3 7
6.16.44-002	3 7
6.16.44-003	3 7
6.28.44-001	3 7
6.28.44-002	3 7
6.4.44-003	6 7
6.4.44-004	6 7
6.4.44-006	6 7
6.4.44-007	6 7
6.4.44-009	6 7
6.4.44-010	6 7
6.4.45-001	6 7
4.3.1-004	3 6
4.3.1-009	3
5.3.1-008	3 6
5.3.1-010	3 6
5.3.1-015	3
5.3.1-016	3 6
5.3.1-017	3
6.30.50-002	3 6
6.14.6-003	3 7
6.28.45-001	3
FR09T089	3 6
6.12.45-001	3
6.12.45-002	3 6
6.12.45-003	3
6.12.45-004	3 6
6.12.45-005	3 6
6.12.45-007	3 6
6.12.45-008	3 6
6.12.45-009	2 6
6.12.45-010	3 6
6.14.45-001	3 7
6.14.45-003	3 7
6.14.45-004	3 6
6.14.45-005	3 7
6.14.45-006	3 6
6.14.45-007	3 6
6.14.45-008	3 6
6.14.45-009	3 6
6.28.45-002	3
6.14.6-001	2 6
6.14.6-002	2 6
6.14.6-004	6 7
6.14.6-005	7
6.14.6-006	6 7
6.14.6-007	6 7
6.14.6-010	2 6
6.23.6-004	3 7
6.23.6-005	2 3
6.23.6-007	2 3
6.23.6-008	3 7
6.23.6-012	2 3
6.28.44-005	3 6
6.28.55-006	3
6.28.55-007	3 6
6.23.6-001	3 7
6.23.6-006	3 7
6.23.6-009	3
6.4.44-001	3 6
6.4.6-001	3 7
FR04T029	3 6
FR08T074	3 6
6.28.55-002	3
FR01T050	3
5.10.25-001	2 7
5.10.25-002	3 7
5.16.25-002	3
5.16.25-003	2 3
5.16.25-004	2 3
5.16.25-005	2 3
5.16.25-009	2 3
5.16.25-010	2 3
5.16.25-013	3
5.18.25-005	2 7
4.3.1-008	3 7
5.3.1-005	3
FR09T037	3 7
6.29.50-001	7
6.29.50-002	3 7
6.29.50-003	3 7
6.29.50-004	3 7
6.29.50-005	3 7
6.29.50-007	7
6.29.50-008	7
6.30.50-004	6 7
6.30.50-005	6 7
6.31.50-001	6 7
6.31.50-002	7
6.31.50-003	7
6.31.50-004	6 7
6.31.50-005	6 7
6.32.50-001	7
6.32.50-002	7
6.32.50-003	7
6.32.50-004	7
6.32.50-005	7
6.32.50-006	6 7
6.32.50-007	7
6.32.50-008	7
6.33.50-001	6 7
5.10.26-001	3
5.10.26-002	3
5.10.26-003	3
5.10.26-004	3 7
5.10.26-005	3 7
5.10.26-007	3
5.10.26-008	3
5.13.26-001	3 6
5.13.26-002	3
5.13.26-003	3
5.13.26-004	3
5.13.26-005	3
5.13.26-006	3 6
5.13.26-007	3 6
5.13.26-009	3 6
5.14.26-001	3 7
5.14.26-002	3 7
5.14.26-003	3 6
5.16.26-001	3
5.16.26-002	3
5.16.26-003	3
5.16.40-001	3
5.18.26-001	3 6
5.18.26-002	3 7
FR06T097	6 7
FR07T026	6 7
6.28.44-003	3 6
AA	3 7
PC 9816-069	3 7
PC 9816-079	6
PC 9816-096	6 7
PC 9816-104	6 7
PC 9816-114	6 7
PC 9817-097	6
4.18.15-010	3 7
4.18.15-042	3 7
4.18.15-047	3
4.18.15-048	3 7
4.3.1-003	3 7
4.3.1-005	3 7
4.3.1-006	3
4.3.1-007	3 7
5.3.1-009	3
5.3.1-011	3
5.3.1-012	3 7
5.3.1-013	3 7
5.3.1-014	3
5.4.15-001	3 6
5.4.15-002	3
5.4.15-003	3 7
FR01T070	3 7
FR49T083	7
5.16.17-003	3
5.16.25-006	3
5.16.25-008	3
5.16.25-012	3
5.20.6-001	3
6.16.44-008	3
6.4.45-003	3 6
6.4.6-004	3
6.4.6-006	3
6.4.6-007	3
6.4.6-008	3
6.4.6-009	3
5.16.17-001	3 7
5.16.17-004	3 7
6.14.17-001	3 6
6.14.17-002	3 7
6.14.17-003	3 7
6.14.17-004	7
6.14.17-005	3 6
FR02T024	3
4.14.17-001	7
5.13.26-008	3 6
6.28.44-004	3
4.3.1-001	3 7
5.3.1-007	3 7
5.3.1-018	3 7
5.10.40-001	3
5.10.40-002	3
5.10.40-003	7
5.10.40-004	3 7
5.10.40-005	3
5.10.40-007	3
5.10.40-008	3 7
5.10.40-009	7
5.10.40-010	3 7
5.10.40-011	3 7
5.10.40-012	7
5.10.40-013	3
5.10.40-014	3
5.10.40-015	7
5.10.40-016	3 7
5.10.40-017	3
5.13.40-002	3 7
5.13.40-003	6 7
5.13.40-004	3
5.16.40-003	3
5.16.40-004	3 7
6.30.50-001	3 6
6.30.50-003	6 7
6.10.55-001	3
6.10.55-002	3 7
6.10.55-003	3 7
6.10.55-004	3 7
6.10.55-005	3
6.10.55-006	3 7
6.10.55-007	7
6.10.55-008	3 7
6.10.55-009	3 7
6.10.55-010	3 7
6.16.55-001	3 7
6.16.55-002	3
6.23.17-001	3
6.23.55-002	3 7
6.23.55-005	3
6.23.55-007	3 7
6.23.55-008	3
6.28.55-001	3
6.28.55-003	3
6.28.55-004	3 7
6.28.55-005	3
5.13.40-001	3 7
5.16.25-001	3 7
5.18.25-004	15 3
5.3.1-006	6 7
6.16.44-004	3 6
6.16.44-006	3 7
6.16.44-007	3 7
6.16.44-009	3 6
6.23.17-003	3 6
6.23.17-004	3 7
Bertiolle	7
Napoleon	3 6

Map Positions


Haplotype Block	Map Name	Linkage Group	Start	Stop
Pav-HB-02-18	Sweet Cherry-RosBREED-1.6K-2019	2	66.96	69.68

Projects


Project Name
RosBREED_Sweet_Cherry_CRS_Haplotype_2020

Haplotypes

Marker	2	3	4	5	6	7	8	9	10	11	12	13	14	15
RosBREED_snp_sweet_cherry_Pp2_23331142	B	B	B	B	B	A	B	B	B	B	A	B	A	A
RosBREED_snp_sweet_cherry_Pp2_23388838	A	B	B	A	A	B	A	B	A	-	B	-	-	A
RosCOS1406-084_snp_sweet_cherry_Pp2_23404552	B	B	A	B	A	B	-	-	A	B	-	-	-	A
RosCOS1406-327_snp_sweet_cherry_Pp2_23404309	B	B	B	A	A	B	A	B	B	B	B	-	-	A

Alignments

Feature Name	Type	Location	Analysis
Pp02	chromosome	Pp02:27728861..29678600.	Prunus persica Whole Genome Assembly v2.0 & Annotation v2.1 (v2.0.a1)