Pav-HB-02-14

Haplotype Block Overview

Name	Pav-HB-02-14
Species	Prunus avium
Stock Haplotype	[view all 517]
Haplotype	[view all]

Publications


Year	Publication
2019	Vanderzande S, Howard NP, Cai L, Da Silva Linge C, Antanaviciute L, Bink MCAM, Kruisselbrink JW, Bassil N, Gasic K, Iezzoni A, Van de Weg E, Peace C. High-quality, genome-wide SNP genotypic data for pedigreed germplasm of the diploid outbreeding species apple, peach, and sweet cherry through a common workflow. PloS one. 2019; 14(6):e0210928.

Stock Haplotype

Name	Haplotype
Summit	13 2
Lambert	3 4
Regina	12 3
Ambrunes	5 6
Lapins	2 4
Stella	3 4
Sweetheart	2 4
Van	2 4
Schneiders	12 2
Bing	2 4
Rainier	2 4
5.18.25-001	2
5.3.1-001	12 4
5.3.1-002	2 4
Benton	3 6
Brooks	2 6
Cashmere	3 5
Chelan	3 5
Chinook	4
Cowiche	2 4
Gil Peck	3 4
Glacier	3 5
Kiona	3 5
Mildew Immune Mazzard #17	3
Mildew Immune Mazzard #23	3
Newstar	2 3
NY 54	6
PMR-1	4 6
Sato Nashiki	2 4
Schmidt	2 3
Selah	2 3
Tieton	4 5
Ulster	3 4
Vic	2
Windsor	13 2
23_1_47	3 6
23_2_46	2 6
23_3_24	3 6
23_3_28	2 6
23_3_40	3 6
23_5_17	3 6
23_8_24	2 6
23_8_45	3 6
4.10.19-001	4
4.10.19-002	2 5
4.10.19-003	4
4.10.19-004	4 5
4.10.19-005	3 4
4.10.19-006	2 5
4.10.19-008	2 4
4.10.19-009	2 5
4.10.19-010	2 5
4.10.19-011	2 4
4.10.2-001	2 5
4.10.2-002	4 5
4.10.2-004	4 5
4.10.2-005	4 5
4.10.2-006	2 6
4.10.2-008	2 4
4.10.2-009	4 5
4.10.2-010	2 6
4.10.5-001	2 5
4.10.5-002	2 5
4.10.5-003	2 3
4.10.5-004	2 3
4.10.5-005	4 5
4.10.5-006	2 3
4.10.5-015	4
4.10.5-016	4 5
4.10.5-018	2 3
4.10.5-019	2 3
4.10.5-020	4 5
4.10.5-028	2 5
4.10.5-029	3 4
4.10.5-030	2
4.16.2-001	3 5
4.18.15-001	2 3
4.18.15-002	2 3
4.18.15-003	3 4
4.18.15-004	2 3
4.18.15-005	3
4.18.15-006	2 3
4.18.15-007	2 4
4.18.15-009	3 4
4.18.15-011	12 2
4.18.15-012	2 3
4.18.15-013	3 4
4.18.15-014	12 2
4.18.15-015	3 4
4.18.15-016	3 4
4.18.15-028	3 4
4.18.15-030	2 3
4.18.15-039	2 3
4.18.15-040	12 4
4.18.15-043	12 4
4.18.2-005	4 6
4.18.2-007	2 5
4.18.2-008	2 6
4.18.2-010	2 5
4.18.2-015	2 5
4.18.2-016	2 6
4.18.2-018	2 6
4.18.2-019	4 6
4.18.2-020	2 6
4.18.2-024	2 6
4.18.2-027	4 6
4.18.2-028	2 5
5.12.5-005	3 5
5.12.5-007	3
5.12.5-008	3
5.12.5-009	3 5
5.12.5-010	3 5
5.12.5-011	5
5.12.5-019	2 3
5.12.5-020	3
5.12.5-021	3
5.12.5-022	5
5.14.15-003	12 4
5.14.15-004	12 2
5.14.15-005	12 2
5.14.15-006	2 3
5.14.15-007	12 2
5.14.15-013	2 3
5.14.15-014	2 3
5.14.15-015	3 4
5.14.15-016	12 4
5.14.15-017	12 4
5.14.15-018	3 4
5.14.15-019	12 4
5.14.15-020	12 2
5.14.23-003	2 6
5.14.23-004	6
5.14.23-006	3 4
5.23.15-001	3 6
5.23.15-002	3 6
5.23.2-001	3 5
5.23.2-002	3 6
5.23.2-003	3 6
5.28.15-001	12 4
5.28.15-002	12 4
5.28.15-003	3 4
5.28.15-004	2 3
5.28.15-005	2 3
5.28.15-006	2 3
5.28.15-007	3 4
5.28.15-008	2 3
5.28.15-009	12 2
5.28.15-010	12 4
5.28.15-011	3 4
5.28.15-012	12 2
5.28.15-013	3 4
5.28.37-001	2 4
5.28.37-002	2 4
5.28.37-003	2
5.28.37-004	2
5.28.37-005	2
5.28.37-008	2 4
5.28.37-009	2 4
5.28.37-010	13 2
5.28.37-011	13 2
5.28.37-012	2 4
5.4.15-004	3 4
5.4.15-005	12 2
6.14.2-006	2 5
6.14.2-007	2 6
6.14.2-008	4 6
6.14.2-009	2 4
6.14.2-010	2 6
6.14.2-011	2 6
6.14.2-012	4 6
6.14.2-013	2
6.14.2-015	4 6
6.29.49-001	3 6
6.29.49-002	3 6
6.29.49-003	2 3
6.29.49-005	3 6
6.29.49-007	2 3
6.29.49-008	3 6
6.30.49-009	3 4
6.30.49-011	3 4
6.30.49-012	3 4
6.30.49-013	3 4
6.30.49-014	3 4
6.30.49-015	3 4
6.30.49-016	3 4
6.30.49-017	3 4
6.31.49-003	3 4
6.31.49-004	2 3
6.31.49-005	2 3
6.31.49-006	3
6.31.49-007	3 4
6.31.49-009	3 4
6.31.49-010	3 4
6.31.49-011	3 4
6.31.49-012	3 4
6.31.49-013	2 3
6.31.49-014	2 3
6.31.49-015	2 3
6.32.49-032	3 4
6.32.49-033	3 4
6.32.49-034	3 4
6.32.49-035	3 4
6.32.49-037	3 4
6.32.49-038	3 4
6.32.49-039	3 4
6.32.49-040	3 4
6.32.49-041	3 4
6.33.49-001	3 4
6.33.49-002	3 4
6.33.49-003	3 4
6.33.49-004	3 4
23-01-11	2 6
23-02-34	2 6
23-03-13	2 6
23-03-23	3 6
23-03-48	3 6
23-03-56	2 6
23-06-04	3 6
23-06-23	3 6
23-07-26	3 6
23-08-55	3 6
Dzherlo	2
Olympus	4
PC 7146-16	3 5
Kordia	12 2
Cristobalina	10 3
Vittoria	12 2
FR20T047	2 3
FR13T004	4 6
FR13T071	3 6
FR31T121	12 2
FR32T087	2
FR32T088	2
FR32T093	3 4
FR20T045	3 4
FR26T117	2 4
FR29T115	3 4
PC 9816-005	2 6
PC 9816-023	4 6
PC 9816-041	4 6
PC 9816-059	4 6
PC 9816-083	4
PC 9816-103	4
PC 9816-105	4 6
PC 9816-106	4
PC 9816-112	4
PC 9816-078	2 6
PC 9819-005	4 6
PC 9819-031	2 6
PC 9819-038	2 6
PC 9814-025	2 6
PC 9814-078	4
PC 9814-103	4 6
PC 9814-105	4 6
PC 9814-026	4
PC 9814-028	4 6
PC 9814-055	2 6
PC 9814-062	2 6
PC 9814-063	2 4
PC 9814-068	4 6
PC 9814-071	2 6
PC 9814-076	4 6
PC 9819-034	4
PC 9816-042	4 6
Emperor Francis	2 3
Black Republican	3 4
Krupnoplodnaya	2
Early Burlat	5 6
Venus	13 2
Moreau	5 6
Index	3 4
Sunburst	13 4
6.14.6-008	2 6
FR02T062	4 6
FR02T063	4 6
5.14.23.001	3 4
6.16.44-005	2 6
6.23.44-001	3
6.23.44-002	3 6
6.23.55-006	6
6.23.55-010	6
6.23.6-002	6
6.23.6-003	3
6.16.44-001	2 3
6.16.44-002	2
6.16.44-003	2 3
6.28.44-001	2 4
6.28.44-002	2 4
6.4.44-003	3 4
6.4.44-004	2 4
6.4.44-006	3 4
6.4.44-007	2 4
6.4.44-009	2
6.4.44-010	2
6.4.45-001	2 4
4.3.1-004	12 4
4.3.1-009	2
5.3.1-008	12 4
5.3.1-010	12 4
5.3.1-015	2
5.3.1-016	12 4
5.3.1-017	2 4
6.30.50-002	2 4
6.14.6-003	2 5
6.28.45-001	2 5
FR09T089	3 5
6.12.45-001	3 5
6.12.45-002	3
6.12.45-003	10
6.12.45-004	10 3
6.12.45-005	10 3
6.12.45-007	3
6.12.45-008	3 5
6.12.45-009	10 3
6.12.45-010	3
6.14.45-001	10 2
6.14.45-003	3 4
6.14.45-004	3 4
6.14.45-005	2 3
6.14.45-006	3 4
6.14.45-007	3 4
6.14.45-008	10 4
6.14.45-009	3 4
6.28.45-002	3 4
6.14.6-001	2 4
6.14.6-002	2 4
6.14.6-004	2
6.14.6-005	2
6.14.6-006	2
6.14.6-007	2
6.14.6-010	2 4
6.23.6-004	2 3
6.23.6-005	2 6
6.23.6-007	2 3
6.23.6-008	2 6
6.23.6-012	2 6
6.28.44-005	11 4
6.28.55-006	2 4
6.28.55-007	4
6.23.6-001	2 3
6.23.6-006	2 6
6.23.6-009	2 6
6.4.44-001	2 4
6.4.6-001	3 4
FR04T029	3 4
FR08T074	4 6
6.28.55-002	3 4
FR01T050	2 4
5.10.25-001	2
5.10.25-002	2
5.16.25-002	2 3
5.16.25-003	2 3
5.16.25-004	2 3
5.16.25-005	2
5.16.25-009	2
5.16.25-010	2
5.16.25-013	2 3
5.18.25-005	2
4.3.1-008	2
5.3.1-005	12 4
FR09T037	2 4
6.29.50-001	2 3
6.29.50-002	3 6
6.29.50-003	3 6
6.29.50-004	3 6
6.29.50-005	3 6
6.29.50-007	2 3
6.29.50-008	2 3
6.30.50-004	3 4
6.30.50-005	3 4
6.31.50-001	3 4
6.31.50-002	2 3
6.31.50-003	2 3
6.31.50-004	2 3
6.31.50-005	3 4
6.32.50-001	3 4
6.32.50-002	3 4
6.32.50-003	3 4
6.32.50-004	3 4
6.32.50-005	3 4
6.32.50-006	3 4
6.32.50-007	3 4
6.32.50-008	3 4
6.33.50-001	3 4
5.10.26-001	4 6
5.10.26-002	4 5
5.10.26-003	4 5
5.10.26-004	2 6
5.10.26-005	2 5
5.10.26-007	4 6
5.10.26-008	4 5
5.13.26-001	4 5
5.13.26-002	5 6
5.13.26-003	5 6
5.13.26-004	6
5.13.26-005	5 6
5.13.26-006	4 6
5.13.26-007	5 6
5.13.26-009	4 5
5.14.26-001	2 6
5.14.26-002	2 6
5.14.26-003	4 5
5.16.26-001	2 5
5.16.26-002	2 5
5.16.26-003	2 5
5.16.40-001	3 6
5.18.26-001	4 6
5.18.26-002	2 5
FR06T097	2 4
FR07T026	4
6.28.44-003	2 4
AA	2 4
PC 9816-069	2 6
PC 9816-079	4
PC 9816-096	2 4
PC 9816-104	2 4
PC 9816-114	4
PC 9817-097	4
4.18.15-010	12 4
4.18.15-042	12 2
4.18.15-047	12 4
4.18.15-048	12 2
4.3.1-003	2 3
4.3.1-005	12 3
4.3.1-006	2 3
4.3.1-007	12 3
5.3.1-009	12 2
5.3.1-011	12 2
5.3.1-012	2 3
5.3.1-013	12 3
5.3.1-014	12 2
5.4.15-001	12 4
5.4.15-002	12 2
5.4.15-003	3 4
FR01T070	12 2
FR49T083	2 3
5.16.17-003	2 3
5.16.25-006	2 3
5.16.25-008	2 3
5.16.25-012	2
5.20.6-001	2 3
6.16.44-008	2 3
6.4.45-003	2
6.4.6-004	2
6.4.6-006	2 3
6.4.6-007	3
6.4.6-008	3 6
6.4.6-009	3 6
5.16.17-001	13 2
5.16.17-004	13 2
6.14.17-001	4
6.14.17-002	2 4
6.14.17-003	2 4
6.14.17-005	2 4
FR02T024	2 4
4.14.17-001	2 4
5.13.26-008	4 6
6.28.44-004	4 5
4.3.1-001	2
5.3.1-007	2 4
5.3.1-018	2
5.10.40-001	2 4
5.10.40-002	2 4
5.10.40-003	13 4
5.10.40-004	13 2
5.10.40-005	2
5.10.40-007	2
5.10.40-008	13 4
5.10.40-009	13 2
5.10.40-010	13 4
5.10.40-011	13 4
5.10.40-012	13 2
5.10.40-013	2 4
5.10.40-014	13 4
5.10.40-015	13 4
5.10.40-016	13 2
5.10.40-017	2
5.13.40-002	13 4
5.13.40-003	13 4
5.13.40-004	2 6
5.16.40-003	2
5.16.40-004	13 2
6.30.50-001	2 4
6.30.50-003	13 4
6.10.55-001	2 4
6.10.55-002	2
6.10.55-003	2 4
6.10.55-004	12 4
6.10.55-005	2 4
6.10.55-006	12 4
6.10.55-007	12 2
6.10.55-008	12 2
6.10.55-009	12 2
6.10.55-010	12 4
6.16.55-001	12 3
6.16.55-002	2 3
6.23.17-001	2 6
6.23.55-002	12 3
6.23.55-005	2 3
6.23.55-007	12 3
6.23.55-008	2 6
6.28.55-001	2 4
6.28.55-003	2
6.28.55-004	12 2
6.28.55-005	2 4
5.13.40-001	2 4
5.16.25-001	2 3
5.18.25-004	2 4
5.3.1-006	2 5
6.16.44-004	2 4
6.16.44-006	2 3
6.16.44-007	2 3
6.16.44-009	19 2
6.23.17-003	4 6
6.23.17-004	3 6
Bertiolle	2 3
Napoleon	2 4

Map Positions


Haplotype Block	Map Name	Linkage Group	Start	Stop
Pav-HB-02-14	Sweet Cherry-RosBREED-1.6K-2019	2	51.16	57.95

Projects


Project Name
RosBREED_Sweet_Cherry_CRS_Haplotype_2020

Haplotypes

Marker	2	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20
RosBREED_snp_sweet_cherry_Pp2_19869360	A	A	B	A	A	A	A	B	A	A	A	A	B	-	-	A	-	A	A
RosBREED_snp_sweet_cherry_Pp2_20170303	A	A	A	B	A	A	A	A	B	A	B	B	A	A	A	A	-	A	A
RosBREED_snp_sweet_cherry_Pp2_20340464	B	A	A	A	A	A	B	A	A	A	A	B	B	A	B	B	-	A	-
RosBREED_snp_sweet_cherry_Pp2_20371321	B	B	B	A	A	B	B	B	A	B	B	B	B	A	B	B	B	A	B
RosBREED_snp_sweet_cherry_Pp2_20458193	B	B	A	B	B	-	-	-	A	A	B	B	B	-	-	A	-	A	B

Alignments

Feature Name	Type	Location	Analysis
Pp02	chromosome	Pp02:24500278..25540142.	Prunus persica Whole Genome Assembly v2.0 & Annotation v2.1 (v2.0.a1)