Pav-HB-01-9

Haplotype Block Overview

Name	Pav-HB-01-9
Species	Prunus avium
Stock Haplotype	[view all 518]
Haplotype	[view all]

Publications


Year	Publication
2019	Vanderzande S, Howard NP, Cai L, Da Silva Linge C, Antanaviciute L, Bink MCAM, Kruisselbrink JW, Bassil N, Gasic K, Iezzoni A, Van de Weg E, Peace C. High-quality, genome-wide SNP genotypic data for pedigreed germplasm of the diploid outbreeding species apple, peach, and sweet cherry through a common workflow. PloS one. 2019; 14(6):e0210928.

Stock Haplotype

Name	Haplotype
Summit	3
Lambert	3
Regina	3 5
Ambrunes	3 5
Lapins	3 5
Stella	3
Sweetheart	5
Van	3 5
Schneiders	3 4
Bing	3
Rainier	3 5
5.18.25-001	2 5
5.3.1-001	4 5
5.3.1-002	3 4
Benton	3 5
Brooks	3 5
Cashmere	3
Chelan	3 5
Chinook	3 7
Cowiche	5
Gil Peck	3 7
Glacier	3
Kiona	3
Mildew Immune Mazzard #17	3 5
Mildew Immune Mazzard #23	3 5
Newstar	3
NY 54	3 4
PMR-1	3
Sato Nashiki	3 5
Schmidt	2 3
Selah	3 5
Tieton	3
Ulster	3 7
Vic	2 3
Windsor	3 5
23_1_47	3
23_2_46	3 4
23_3_24	2 3
23_3_28	2 3
23_3_40	3
23_5_17	3
23_8_24	3 4
23_8_45	3
4.10.19-001	3 5
4.10.19-002	3 5
4.10.19-003	3
4.10.19-004	3 5
4.10.19-005	5
4.10.19-006	3
4.10.19-008	3 5
4.10.19-009	3 5
4.10.19-010	3 5
4.10.19-011	3
4.10.2-001	5
4.10.2-002	3
4.10.2-004	3 5
4.10.2-005	5
4.10.2-006	3 5
4.10.2-008	5
4.10.2-009	5
4.10.2-010	3
4.10.5-001	3
4.10.5-002	5
4.10.5-003	3
4.10.5-004	3
4.10.5-005	3 5
4.10.5-006	5
4.10.5-015	3 5
4.10.5-016	3
4.10.5-018	3
4.10.5-019	3
4.10.5-020	3 5
4.10.5-028	3
4.10.5-029	3 5
4.10.5-030	3
4.16.2-001	3
4.18.15-001	3 5
4.18.15-002	3
4.18.15-003	3 5
4.18.15-004	3 5
4.18.15-005	3
4.18.15-006	3 5
4.18.15-007	3
4.18.15-009	3 5
4.18.15-011	3 5
4.18.15-012	3 5
4.18.15-013	3 5
4.18.15-014	5
4.18.15-015	3 5
4.18.15-016	5
4.18.15-028	5
4.18.15-030	3
4.18.15-039	3 5
4.18.15-040	3 5
4.18.15-043	3 5
4.18.2-005	3
4.18.2-007	3 5
4.18.2-008	3
4.18.2-010	5
4.18.2-015	3
4.18.2-016	3 5
4.18.2-018	3 5
4.18.2-019	3 5
4.18.2-020	3 5
4.18.2-024	5
4.18.2-027	3 5
4.18.2-028	3
5.12.5-005	3 5
5.12.5-007	3 5
5.12.5-008	3
5.12.5-009	3
5.12.5-010	3
5.12.5-011	3 5
5.12.5-019	3 5
5.12.5-020	3
5.12.5-021	3 5
5.12.5-022	3
5.14.15-003	5
5.14.15-004	3 5
5.14.15-005	3
5.14.15-006	5
5.14.15-007	3 5
5.14.15-013	3
5.14.15-014	3 5
5.14.15-015	3
5.14.15-016	3 5
5.14.15-017	3
5.14.15-018	3 5
5.14.15-019	3 5
5.14.15-020	3 5
5.14.23-003	5
5.14.23-004	3 5
5.14.23-006	3 5
5.23.15-001	3
5.23.15-002	5
5.23.2-001	3 5
5.23.2-002	3
5.23.2-003	3
5.28.15-001	5
5.28.15-002	5
5.28.15-003	5
5.28.15-004	3 5
5.28.15-005	3 5
5.28.15-006	3 5
5.28.15-007	5
5.28.15-008	5
5.28.15-009	5
5.28.15-010	3 5
5.28.15-011	5
5.28.15-012	5
5.28.15-013	3 5
5.28.37-001	3 5
5.28.37-002	3 5
5.28.37-003	3 5
5.28.37-004	3 5
5.28.37-005	3 5
5.28.37-008	3 5
5.28.37-009	3 5
5.28.37-010	3 5
5.28.37-011	3 5
5.28.37-012	4 5
5.4.15-004	3
5.4.15-005	3 5
6.14.2-006	3 5
6.14.2-007	3 5
6.14.2-008	3
6.14.2-009	3 5
6.14.2-010	3 5
6.14.2-011	3 5
6.14.2-012	3
6.14.2-013	3
6.14.2-015	3
6.29.49-001	3
6.29.49-002	3 5
6.29.49-003	3 5
6.29.49-005	3
6.29.49-007	3
6.29.49-008	5
6.30.49-009	3 5
6.30.49-011	3 5
6.30.49-012	3 5
6.30.49-013	3
6.30.49-014	5
6.30.49-015	3 5
6.30.49-016	3
6.30.49-017	3 5
6.31.49-003	3
6.31.49-004	3 5
6.31.49-005	3 5
6.31.49-006	5
6.31.49-007	3
6.31.49-009	3
6.31.49-010	5
6.31.49-011	3
6.31.49-012	5
6.31.49-013	3
6.31.49-014	5
6.31.49-015	5
6.32.49-032	3 5
6.32.49-033	3
6.32.49-034	3
6.32.49-035	3
6.32.49-037	3 5
6.32.49-038	3 5
6.32.49-039	3 5
6.32.49-040	3 5
6.32.49-041	3 5
6.33.49-001	3
6.33.49-002	5
6.33.49-003	5
6.33.49-004	3 5
23-01-11	3
23-02-34	2 3
23-03-13	2 4
23-03-23	3 4
23-03-48	2 3
23-03-56	2 3
23-06-04	3
23-06-23	2 3
23-07-26	2 3
23-08-55	3
Dzherlo	2 3
Olympus	3 5
PC 7146-16	3 5
Kordia	4
Cristobalina	10 3
Vittoria	3 5
FR20T047	3 5
FR13T004	5
FR13T071	3
FR31T121	3 5
FR32T087	3 5
FR32T088	3
FR32T093	3 5
FR20T045	5
FR26T117	3
FR29T115	3
PC 9816-005	3
PC 9816-023	3 5
PC 9816-041	3 5
PC 9816-059	3 5
PC 9816-083	3 5
PC 9816-103	3
PC 9816-105	3 5
PC 9816-106	3 5
PC 9816-112	3 5
PC 9816-078	3 5
PC 9819-005	3
PC 9819-031	3
PC 9819-038	3
PC 9814-025	3
PC 9814-078	3
PC 9814-103	3
PC 9814-105	3
PC 9814-026	3
PC 9814-028	3
PC 9814-055	3
PC 9814-062	3
PC 9814-063	3
PC 9814-068	3
PC 9814-071	3
PC 9814-076	3
PC 9819-034	3
PC 9816-042	3
Emperor Francis	2 3
Black Republican	3
Krupnoplodnaya	2 6
Early Burlat	3 5
Venus	3 4
Moreau	5 6
Index	3
Sunburst	3
6.14.6-008	5
FR02T062	5
FR02T063	5
5.14.23.001	5
6.16.44-005	3 5
6.23.44-001	5
6.23.44-002	3 5
6.23.55-006	3 5
6.23.55-010	3
6.23.6-002	3
6.23.6-003	3 5
6.16.44-001	3
6.16.44-002	3 5
6.16.44-003	3 5
6.28.44-001	5
6.28.44-002	3 5
6.4.44-003	3
6.4.44-004	3 5
6.4.44-006	3 5
6.4.44-007	3 5
6.4.44-009	3 5
6.4.44-010	3
6.4.45-001	3 5
4.3.1-004	3 4
4.3.1-009	3 4
5.3.1-008	3 4
5.3.1-010	3 4
5.3.1-015	3 4
5.3.1-016	3 4
5.3.1-017	3 4
6.30.50-002	3 5
6.14.6-003	5
6.28.45-001	3 5
FR09T089	3
6.12.45-001	3
6.12.45-002	3
6.12.45-003	10 3
6.12.45-004	10 3
6.12.45-005	10 3
6.12.45-007	3
6.12.45-008	3
6.12.45-009	3
6.12.45-010	3
6.14.45-001	3 5
6.14.45-003	10 5
6.14.45-004	10 5
6.14.45-005	3 5
6.14.45-006	3 5
6.14.45-007	3
6.14.45-008	5
6.14.45-009	10 5
6.28.45-002	3 5
6.14.6-001	3
6.14.6-002	3 5
6.14.6-004	3 5
6.14.6-005	2 5
6.14.6-006	2 5
6.14.6-007	2 5
6.14.6-010	2 5
6.23.6-004	3 5
6.23.6-005	3 5
6.23.6-007	2 5
6.23.6-008	3 5
6.23.6-012	2 3
6.28.44-005	3 5
6.28.55-006	3 5
6.28.55-007	5
6.23.6-001	5
6.23.6-006	5
6.23.6-009	5
6.4.44-001	3 5
6.4.6-001	3 5
FR04T029	3 5
FR08T074	3 5
6.28.55-002	3 5
FR01T050	4 5
5.10.25-001	2 5
5.10.25-002	2 3
5.16.25-002	2 5
5.16.25-003	2 3
5.16.25-004	2 3
5.16.25-005	2 5
5.16.25-009	2 3
5.16.25-010	2 5
5.16.25-013	2 5
5.18.25-005	2 5
4.3.1-008	4 5
5.3.1-005	4 5
FR09T037	3 5
6.29.50-001	3 5
6.29.50-002	3 5
6.29.50-003	3 5
6.29.50-004	3 5
6.29.50-005	3
6.29.50-007	5
6.29.50-008	3 5
6.30.50-004	3 5
6.30.50-005	5
6.31.50-001	3 5
6.31.50-002	3 5
6.31.50-003	3 5
6.31.50-004	3 5
6.31.50-005	5
6.32.50-001	5
6.32.50-002	5
6.32.50-003	5
6.32.50-004	3 5
6.32.50-005	5
6.32.50-006	3 5
6.32.50-007	3
6.32.50-008	3
6.33.50-001	3 5
5.10.26-001	3 5
5.10.26-002	3 5
5.10.26-003	5
5.10.26-004	5
5.10.26-005	3 5
5.10.26-007	3 5
5.10.26-008	3 5
5.13.26-001	3 6
5.13.26-002	3 5
5.13.26-003	3 5
5.13.26-004	3 5
5.13.26-005	3 6
5.13.26-006	3
5.13.26-007	3 5
5.13.26-009	3 5
5.14.26-001	5 6
5.14.26-002	3 6
5.14.26-003	5 6
5.16.26-001	3 5
5.16.26-002	5
5.16.26-003	5
5.16.40-001	5 6
5.18.26-001	5 6
5.18.26-002	5 6
FR06T097	5
FR07T026	5
6.28.44-003	3 5
AA	3
PC 9816-069	3 5
PC 9816-079	3 5
PC 9816-096	3
PC 9816-104	3 5
PC 9816-114	3 5
PC 9817-097	3 5
4.18.15-010	3 5
4.18.15-042	5
4.18.15-047	3
4.18.15-048	5
4.3.1-003	4 5
4.3.1-005	3 4
4.3.1-006	3 4
4.3.1-007	4 5
5.3.1-009	4 5
5.3.1-011	3 4
5.3.1-012	3 4
5.3.1-013	4 5
5.3.1-014	4 5
5.4.15-001	3
5.4.15-002	3 5
5.4.15-003	3 5
FR01T070	5
FR49T083	5
5.16.17-003	3 5
5.16.25-006	3 5
5.16.25-008	3 5
5.16.25-012	3
5.20.6-001	3
6.16.44-008	5
6.4.45-003	3 5
6.4.6-004	3 5
6.4.6-006	3 5
6.4.6-007	3 5
6.4.6-008	3 5
6.4.6-009	3 5
5.16.17-001	3 5
5.16.17-004	3 5
6.14.17-001	3
6.14.17-002	3
6.14.17-003	3
6.14.17-004	3
6.14.17-005	3
FR02T024	3
4.14.17-001	5
5.13.26-008	3
6.28.44-004	3 5
4.3.1-001	4 5
5.3.1-007	4 5
5.3.1-018	4 5
5.10.40-001	3 4
5.10.40-002	3
5.10.40-003	4 5
5.10.40-004	3 4
5.10.40-005	3 4
5.10.40-007	3 5
5.10.40-008	3 4
5.10.40-009	3 5
5.10.40-010	3
5.10.40-011	4 5
5.10.40-012	3 5
5.10.40-013	3
5.10.40-014	3
5.10.40-015	3 5
5.10.40-016	3
5.10.40-017	3
5.13.40-002	3
5.13.40-003	3
5.13.40-004	3
5.16.40-003	3 5
5.16.40-004	4 5
6.30.50-001	3 4
6.30.50-003	3 4
6.10.55-001	5
6.10.55-002	3 5
6.10.55-003	5
6.10.55-004	3
6.10.55-005	3 5
6.10.55-006	3 5
6.10.55-007	3 5
6.10.55-008	3
6.10.55-009	3 5
6.10.55-010	3 5
6.16.55-001	3
6.16.55-002	5
6.23.17-001	3 5
6.23.55-002	5
6.23.55-005	5
6.23.55-007	5
6.23.55-008	3 5
6.28.55-001	3 5
6.28.55-003	3 5
6.28.55-004	5
6.28.55-005	5
5.13.40-001	5
5.16.25-001	3
5.18.25-004	5
5.3.1-006	3
6.16.44-004	3
6.16.44-006	3 5
6.16.44-007	5
6.16.44-009	3 5
6.23.17-003	3
6.23.17-004	3 5
Bertiolle	3 5
Napoleon	3 4

Map Positions


Haplotype Block	Map Name	Linkage Group	Start	Stop
Pav-HB-01-9	Sweet Cherry-RosBREED-1.6K-2019	1	32.97	33.71

Projects


Project Name
RosBREED_Sweet_Cherry_CRS_Haplotype_2020

Haplotypes

Marker	2	3	4	5	6	7	8	9	10	11	12
RosBREED_snp_sweet_cherry_Pp1_10316151	A	A	A	B	A	B	-	-	B	A	B
RosBREED_snp_sweet_cherry_Pp1_10330576	B	A	B	A	A	B	A	B	B	A	A
RosBREED_snp_sweet_cherry_Pp1_10373928	B	B	B	B	A	B	B	B	A	A	A
RosBREED_snp_sweet_cherry_Pp1_10419462	A	B	B	B	B	B	B	B	B	B	B
RosBREED_snp_sweet_cherry_Pp1_10461071	A	A	A	A	A	A	A	A	B	B	A
RosBREED_snp_tart_cherry_f_Pp1_10396809	B	B	B	B	B	B	B	B	A	A	B

Alignments

Feature Name	Type	Location	Analysis
Pp01	chromosome	Pp01:10765510..11015317.	Prunus persica Whole Genome Assembly v2.0 & Annotation v2.1 (v2.0.a1)