Pav-HB-01-36

Haplotype Block Overview

Name	Pav-HB-01-36
Species	Prunus avium
Stock Haplotype	[view all 517]
Haplotype	[view all]

Publications


Year	Publication
2019	Vanderzande S, Howard NP, Cai L, Da Silva Linge C, Antanaviciute L, Bink MCAM, Kruisselbrink JW, Bassil N, Gasic K, Iezzoni A, Van de Weg E, Peace C. High-quality, genome-wide SNP genotypic data for pedigreed germplasm of the diploid outbreeding species apple, peach, and sweet cherry through a common workflow. PloS one. 2019; 14(6):e0210928.

Stock Haplotype

Name	Haplotype
Summit	2 6
Lambert	3 6
Regina	16 2
Ambrunes	2 3
Lapins	2 7
Stella	2 3
Sweetheart	7
Van	2 7
Schneiders	14 2
Bing	10 3
Rainier	10 2
5.18.25-001	6 7
5.3.1-001	2 7
5.3.1-002	2 7
Benton	2 7
Brooks	2 7
Cashmere	2 7
Chelan	3 7
Chinook	3 6
Cowiche	3 7
Gil Peck	2 6
Glacier	3 7
Kiona	7
Mildew Immune Mazzard #17	11 8
Mildew Immune Mazzard #23	11 14
Newstar	2 7
NY 54	15 2
PMR-1	3
Sato Nashiki	3 7
Schmidt	5
Selah	10 3
Tieton	2 7
Ulster	2 6
Vic	10 5
Windsor	11 7
23_1_47	2
23_2_46	15 2
23_3_24	2 3
23_3_28	15 2
23_3_40	2 3
23_5_17	2 3
23_8_24	15 2
23_8_45	2 3
4.10.19-001	7
4.10.19-002	2
4.10.19-003	2 7
4.10.19-004	2 7
4.10.19-005	2
4.10.19-006	2
4.10.19-008	2
4.10.19-009	2
4.10.19-010	2 7
4.10.19-011	2
4.10.2-001	2 3
4.10.2-002	2 3
4.10.2-004	2 7
4.10.2-005	2
4.10.2-006	3 7
4.10.2-008	7
4.10.2-009	2 3
4.10.2-010	2 3
4.10.5-001	2 7
4.10.5-002	3 7
4.10.5-003	2 3
4.10.5-004	3 7
4.10.5-005	2 3
4.10.5-006	2 3
4.10.5-015	2
4.10.5-016	3 7
4.10.5-018	2 3
4.10.5-019	3 7
4.10.5-020	3 7
4.10.5-028	2 7
4.10.5-029	7
4.10.5-030	10 7
4.16.2-001	10 3
4.18.15-001	2 7
4.18.15-002	2
4.18.15-003	2
4.18.15-004	16 2
4.18.15-005	2 7
4.18.15-006	2 7
4.18.15-007	2 3
4.18.15-009	16 7
4.18.15-011	2
4.18.15-012	2
4.18.15-013	2
4.18.15-014	16 7
4.18.15-015	16 7
4.18.15-016	16 7
4.18.15-028	2
4.18.15-030	16 7
4.18.15-039	2 7
4.18.15-040	2
4.18.15-043	2 7
4.18.2-005	2
4.18.2-007	2 3
4.18.2-008	2
4.18.2-010	2
4.18.2-015	2 3
4.18.2-016	2
4.18.2-018	2 3
4.18.2-019	2 3
4.18.2-020	2 7
4.18.2-024	2
4.18.2-027	2 7
4.18.2-028	2 7
5.12.5-005	7
5.12.5-007	7
5.12.5-008	7
5.12.5-009	7
5.12.5-010	3 7
5.12.5-011	3 7
5.12.5-019	2 7
5.12.5-020	7
5.12.5-021	3 7
5.12.5-022	7
5.14.15-003	16 2
5.14.15-004	10 2
5.14.15-005	16 2
5.14.15-006	10 16
5.14.15-007	2
5.14.15-013	10 2
5.14.15-014	10 2
5.14.15-015	10 16
5.14.15-016	10 2
5.14.15-017	10 16
5.14.15-018	16 2
5.14.15-019	10 2
5.14.15-020	2
5.14.23-003	2
5.14.23-004	2
5.14.23-006	2 7
5.23.15-001	2 7
5.23.15-002	2
5.23.2-001	2
5.23.2-002	3 7
5.23.2-003	2
5.28.15-001	2 7
5.28.15-002	16 3
5.28.15-003	16 7
5.28.15-004	16 7
5.28.15-005	2 7
5.28.15-006	2 7
5.28.15-007	2 7
5.28.15-008	2
5.28.15-009	16 7
5.28.15-010	2 7
5.28.15-011	16 3
5.28.15-012	16 7
5.28.15-013	16 3
5.28.37-001	2 7
5.28.37-002	6 7
5.28.37-003	3 6
5.28.37-004	7
5.28.37-005	2 3
5.28.37-008	6 7
5.28.37-009	2 7
5.28.37-010	3
5.28.37-011	6 7
5.28.37-012	14 7
5.4.15-004	10 2
5.4.15-005	10 16
6.14.2-006	2
6.14.2-007	2
6.14.2-008	2
6.14.2-009	2 7
6.14.2-010	2
6.14.2-011	10 2
6.14.2-012	10 2
6.14.2-013	2
6.14.2-015	10 3
6.29.49-001	2 8
6.29.49-002	11 2
6.29.49-003	11 3
6.29.49-005	3 8
6.29.49-007	3 8
6.29.49-008	3 8
6.30.49-009	11 2
6.30.49-011	3 8
6.30.49-012	11 2
6.30.49-013	3 8
6.30.49-014	3 8
6.30.49-015	2 8
6.30.49-016	3 8
6.30.49-017	11 2
6.31.49-003	10 11
6.31.49-004	10 11
6.31.49-005	10 11
6.31.49-006	10 8
6.31.49-007	10 8
6.31.49-009	10 11
6.31.49-010	10 11
6.31.49-011	3 8
6.31.49-012	10 8
6.31.49-013	8
6.31.49-014	10 8
6.31.49-015	10 11
6.32.49-032	11 3
6.32.49-033	3 8
6.32.49-034	11 3
6.32.49-035	2 8
6.32.49-037	11 3
6.32.49-038	3 8
6.32.49-039	11 3
6.32.49-040	3 8
6.32.49-041	3 8
6.33.49-001	3 8
6.33.49-002	11 3
6.33.49-003	10 8
6.33.49-004	10 8
23-01-11	2 3
23-02-34	15 2
23-03-13	15 2
23-03-23	15 2
23-03-48	2 3
23-03-56	2 3
23-06-04	2 3
23-06-23	15 3
23-07-26	2
23-08-55	15 3
Dzherlo	2 7
Olympus	2 6
PC 7146-16	3 7
Kordia	2 7
Cristobalina	12
Vittoria	18 2
FR20T047	3 7
FR13T004	3 7
FR13T071	3
FR31T121	18 7
FR32T087	2 9
FR32T088	10 8
FR32T093	10 9
FR20T045	2 7
FR26T117	10 2
FR29T115	14 3
PC 9816-005	10 3
PC 9816-023	10 3
PC 9816-041	10 3
PC 9816-059	2 3
PC 9816-083	3
PC 9816-103	10 3
PC 9816-105	10 3
PC 9816-106	3
PC 9816-112	10 3
PC 9816-078	2 3
PC 9819-005	3
PC 9819-031	2 3
PC 9819-038	2 3
PC 9814-025	3
PC 9814-078	10 3
PC 9814-103	3
PC 9814-105	3
PC 9814-026	3
PC 9814-028	10 3
PC 9814-055	3
PC 9814-062	10 3
PC 9814-063	3
PC 9814-068	10 3
PC 9814-071	3
PC 9814-076	3
PC 9819-034	10 3
PC 9816-042	10 3
Emperor Francis	2 3
Black Republican	10 2
Krupnoplodnaya	6 7
Early Burlat	7
Venus	11 3
Moreau	7
Index	3
Sunburst	2 6
6.14.6-008	10 3
FR02T062	3 7
FR02T063	3 7
5.14.23.001	2
6.16.44-005	3 7
6.23.44-002	7
6.23.55-006	2 7
6.23.55-010	2 7
6.23.6-002	2 7
6.23.6-003	2
6.16.44-001	10 8
6.16.44-002	10 8
6.16.44-003	3 8
6.28.44-001	3 8
6.28.44-002	7 9
6.4.44-003	3 9
6.4.44-004	10 9
6.4.44-006	10 9
6.4.44-007	3 9
6.4.44-009	10 9
6.4.44-010	10 9
6.4.45-001	3 9
4.3.1-004	3 7
4.3.1-009	3 7
5.3.1-008	2 3
5.3.1-010	3 7
5.3.1-015	10 7
5.3.1-016	10 2
5.3.1-017	2 3
6.30.50-002	10 3
6.14.6-003	2 7
6.28.45-001	3
FR09T089	3 7
6.12.45-001	12 7
6.12.45-002	12 7
6.12.45-003	12 7
6.12.45-004	12 7
6.12.45-005	12 7
6.12.45-007	12 7
6.12.45-008	12 7
6.12.45-009	12 7
6.12.45-010	12 7
6.14.45-001	12 2
6.14.45-003	10 12
6.14.45-004	12 2
6.14.45-005	12 2
6.14.45-006	12
6.14.45-007	10 12
6.14.45-008	12 2
6.14.45-009	12 2
6.28.45-002	12 7
6.14.6-001	10 7
6.14.6-002	10 2
6.14.6-004	2
6.14.6-005	2
6.14.6-006	10 2
6.14.6-007	10 2
6.14.6-010	10 2
6.23.6-004	7
6.23.6-005	2 7
6.23.6-007	2 7
6.23.6-008	2 7
6.23.6-012	2 7
6.28.44-005	10 7
6.28.55-006	3
6.28.55-007	3 9
6.23.6-001	3 7
6.23.6-006	2
6.23.6-009	2 7
6.4.44-001	10 18
6.4.6-001	2 3
FR04T029	20
FR08T074	10 3
6.28.55-002	3 7
FR01T050	2 7
5.10.25-001	2 7
5.10.25-002	6 7
5.16.25-002	10 6
5.16.25-003	10 6
5.16.25-004	10 6
5.16.25-005	10 6
5.16.25-009	3 6
5.16.25-010	10 6
5.16.25-013	10 6
5.18.25-005	7
4.3.1-008	2 7
5.3.1-005	2
FR09T037	10 2
6.29.50-001	14 3
6.29.50-002	14 3
6.29.50-003	14 2
6.29.50-004	11 2
6.29.50-005	11 3
6.29.50-007	14 3
6.29.50-008	14 2
6.30.50-004	14 2
6.30.50-005	11 2
6.31.50-001	14 3
6.31.50-002	11 3
6.31.50-003	11 3
6.31.50-004	14 3
6.31.50-005	10 14
6.32.50-001	14 3
6.32.50-002	11 3
6.32.50-003	11 2
6.32.50-004	14 2
6.32.50-005	14 2
6.32.50-006	11 2
6.32.50-007	14 3
6.32.50-008	11 3
6.33.50-001	14 3
5.10.26-001	7
5.10.26-002	7
5.10.26-003	2 7
5.10.26-004	2 7
5.10.26-005	7
5.10.26-007	2 7
5.10.26-008	2 7
5.13.26-001	3 7
5.13.26-002	3 7
5.13.26-003	3 7
5.13.26-004	3 7
5.13.26-005	3 7
5.13.26-006	3 7
5.13.26-007	3 7
5.13.26-009	3 7
5.14.26-001	10 7
5.14.26-002	10 7
5.14.26-003	10 7
5.16.26-001	3 7
5.16.26-002	3 7
5.16.26-003	10 7
5.16.40-001	3 7
5.18.26-001	7
5.18.26-002	7
FR06T097	3 7
FR07T026	3 7
6.28.44-003	10 7
AA	10 3
PC 9816-069	2 3
PC 9816-079	2 3
PC 9816-096	10 3
PC 9816-104	10 3
PC 9816-114	2 3
PC 9817-097	10 3
4.18.15-010	2
4.18.15-042	16 7
4.18.15-047	2 7
4.18.15-048	2 7
4.3.1-003	2 7
4.3.1-005	2 7
4.3.1-006	16 2
4.3.1-007	16 7
5.3.1-009	16 2
5.3.1-011	16 7
5.3.1-012	16 7
5.3.1-013	16 2
5.3.1-014	16 2
5.4.15-001	16 3
5.4.15-002	2
5.4.15-003	2 3
FR01T070	2
FR49T083	2 7
5.16.17-003	10
5.16.25-006	3
5.16.25-008	3
5.16.25-012	10
5.20.6-001	2 3
6.16.44-008	10 3
6.4.45-003	10
6.4.6-004	10 3
6.4.6-006	10
6.4.6-007	3
6.4.6-008	2 3
6.4.6-009	3 7
5.16.17-001	10 6
5.16.17-004	10 6
6.14.17-001	2
6.14.17-002	10 6
6.14.17-003	2 6
6.14.17-004	2
6.14.17-005	6
FR02T024	2 3
4.14.17-001	2 7
5.13.26-008	2 3
6.28.44-004	7
4.3.1-001	7
5.3.1-007	2 7
5.3.1-018	2 7
5.10.40-001	11 2
5.10.40-002	11 2
5.10.40-003	3 7
5.10.40-004	2 3
5.10.40-005	11 7
5.10.40-007	3 7
5.10.40-008	11 2
5.10.40-009	3 7
5.10.40-010	2 3
5.10.40-011	2 3
5.10.40-012	3 7
5.10.40-013	11 2
5.10.40-014	3 7
5.10.40-015	11 2
5.10.40-016	11 2
5.10.40-017	11 7
5.13.40-002	11 3
5.13.40-003	11 3
5.13.40-004	3
5.16.40-003	10 11
5.16.40-004	10 3
6.30.50-001	2 3
6.30.50-003	3
6.10.55-001	18 7
6.10.55-002	2 7
6.10.55-003	18 2
6.10.55-004	18 2
6.10.55-005	2 7
6.10.55-006	2 7
6.10.55-007	18 2
6.10.55-008	2
6.10.55-009	18 7
6.10.55-010	18 2
6.16.55-001	10 2
6.16.55-002	10 2
6.23.17-001	2 7
6.23.55-002	2 7
6.23.55-005	18 7
6.23.55-007	18 2
6.23.55-008	2
6.28.55-001	18 3
6.28.55-003	2 7
6.28.55-004	18 7
6.28.55-005	18 7
5.13.40-001	2 7
5.16.25-001	3
5.18.25-004	2
5.3.1-006	3 7
6.16.44-004	25 3
6.16.44-006	3 8
6.16.44-007	2 3
6.16.44-009	3
6.23.17-003	2
6.23.17-004	2
Bertiolle	8 9
Napoleon	2 3

Map Positions


Haplotype Block	Map Name	Linkage Group	Start	Stop
Pav-HB-01-36	Sweet Cherry-RosBREED-1.6K-2019	1	121.94	124.32

Projects


Project Name
RosBREED_Sweet_Cherry_CRS_Haplotype_2020

Haplotypes

Marker	2	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	21	22	23	24	25	26	27	28
RosBREED_snp_sweet_cherry_Pp1_36802450	A	B	B	A	A	A	A	B	B	A	A	A	A	A	A	B	A	B	B	B	B	B	A	B	B	B	B
RosBREED_snp_sweet_cherry_Pp1_36865299	B	A	-	-	A	A	A	A	B	A	B	-	B	A	B	-	B	A	B	A	B	B	B	B	B	A	-
RosBREED_snp_sweet_cherry_Pp1_36967784	A	A	A	A	B	A	A	A	A	A	B	B	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A
RosBREED_snp_sweet_cherry_Pp1_36993407	B	B	B	B	B	B	A	B	A	B	B	B	B	B	A	A	B	A	B	B	A	A	B	B	B	A	-
RosBREED_snp_tart_cherry_a_Pp1_36919612	A	A	A	A	B	A	A	A	B	A	B	B	A	A	A	B	A	B	A	A	B	B	A	A	B	A	-
RosBREED_snp_tart_cherry_a_Pp1_36959467	B	B	B	B	A	B	B	B	B	B	A	A	B	B	B	B	B	B	B	B	B	B	B	B	B	B	B
RosBREED_snp_tart_cherry_a_Pp1_37638086	A	A	A	A	A	A	A	A	B	A	A	A	A	B	A	B	B	B	A	B	A	A	B	A	B	A	-
RosCOS1169-212_snp_sweet_cherry_Pp1_37078592	A	A	A	A	B	B	B	B	B	A	B	B	B	B	B	B	B	B	B	A	B	A	A	A	A	B	-

Alignments

Feature Name	Type	Location	Analysis
Pp01	chromosome	Pp01:40497247..41836007.	Prunus persica Whole Genome Assembly v2.0 & Annotation v2.1 (v2.0.a1)