Pav-HB-01-25

Haplotype Block Overview

Name	Pav-HB-01-25
Species	Prunus avium
Stock Haplotype	[view all 518]
Haplotype	[view all]

Publications


Year	Publication
2019	Vanderzande S, Howard NP, Cai L, Da Silva Linge C, Antanaviciute L, Bink MCAM, Kruisselbrink JW, Bassil N, Gasic K, Iezzoni A, Van de Weg E, Peace C. High-quality, genome-wide SNP genotypic data for pedigreed germplasm of the diploid outbreeding species apple, peach, and sweet cherry through a common workflow. PloS one. 2019; 14(6):e0210928.

Stock Haplotype

Name	Haplotype
Summit	4 5
Lambert	2 4
Regina	2 6
Ambrunes	6 7
Lapins	2 5
Stella	2 5
Sweetheart	2 5
Van	5
Schneiders	2 6
Bing	2
Rainier	2 5
5.18.25-001	2 4
5.3.1-001	5 6
5.3.1-002	5 6
Benton	2 5
Brooks	2 5
Cashmere	2 5
Chelan	2 5
Chinook	2 5
Cowiche	5 9
Gil Peck	4 5
Glacier	2 5
Kiona	2
Mildew Immune Mazzard #17	2 6
Mildew Immune Mazzard #23	10
Newstar	2 5
NY 54	2 5
PMR-1	2 9
Sato Nashiki	2
Schmidt	2 9
Selah	2
Tieton	2 5
Ulster	4 5
Vic	2 9
Windsor	2 5
23_1_47	2 5
23_2_46	2 5
23_3_24	2
23_3_28	2
23_3_40	2
23_5_17	2 5
23_8_24	2
23_8_45	2 5
4.10.19-001	2 5
4.10.19-002	5
4.10.19-003	5
4.10.19-004	2 5
4.10.19-005	2
4.10.19-006	2 5
4.10.19-008	2 5
4.10.19-009	2 5
4.10.19-010	2 5
4.10.19-011	2 5
4.10.2-001	5 7
4.10.2-002	2 7
4.10.2-004	5 6
4.10.2-005	5 7
4.10.2-006	5 6
4.10.2-008	2 5
4.10.2-009	2 7
4.10.2-010	2 7
4.10.5-001	2
4.10.5-002	5
4.10.5-003	2 5
4.10.5-004	5
4.10.5-005	2 5
4.10.5-006	2 5
4.10.5-015	2 5
4.10.5-016	2 5
4.10.5-018	2
4.10.5-019	5
4.10.5-020	2 5
4.10.5-028	2
4.10.5-029	2 5
4.10.5-030	2
4.16.2-001	2 6
4.18.15-001	5 6
4.18.15-002	2
4.18.15-003	2
4.18.15-004	2 6
4.18.15-005	5 6
4.18.15-006	5 6
4.18.15-007	2
4.18.15-009	5 6
4.18.15-011	2
4.18.15-012	2
4.18.15-013	2
4.18.15-014	5 6
4.18.15-015	5 6
4.18.15-016	5 6
4.18.15-028	2
4.18.15-030	5 6
4.18.15-039	5 6
4.18.15-040	2 6
4.18.15-043	2 5
4.18.2-005	2 6
4.18.2-007	2 7
4.18.2-008	5 6
4.18.2-010	2
4.18.2-015	5 7
4.18.2-016	2 6
4.18.2-018	2 7
4.18.2-019	2 7
4.18.2-020	5 6
4.18.2-024	2 7
4.18.2-027	5 6
4.18.2-028	5 6
5.12.5-005	2
5.12.5-007	2
5.12.5-008	2
5.12.5-009	2
5.12.5-010	2 5
5.12.5-011	2 5
5.12.5-019	2
5.12.5-020	2
5.12.5-021	2
5.12.5-022	2
5.14.15-003	2
5.14.15-004	2 5
5.14.15-005	5 6
5.14.15-006	2 6
5.14.15-007	2 5
5.14.15-013	2 6
5.14.15-014	2 6
5.14.15-015	2 6
5.14.15-016	2 6
5.14.15-017	2 6
5.14.15-018	5 6
5.14.15-019	2
5.14.15-020	2
5.14.23-003	5
5.14.23-004	2 5
5.14.23-006	2 5
5.23.15-001	5
5.23.15-002	2
5.23.2-001	5 6
5.23.2-002	2 6
5.23.2-003	5 6
5.28.15-001	6 9
5.28.15-002	6 9
5.28.15-003	6 9
5.28.15-004	6 9
5.28.15-005	6 9
5.28.15-006	2 5
5.28.15-007	6 9
5.28.15-008	6 9
5.28.15-009	6 9
5.28.15-010	2 9
5.28.15-011	5 6
5.28.15-012	6 9
5.28.15-013	5 6
5.28.37-001	4 5
5.28.37-002	4 9
5.28.37-003	5
5.28.37-004	5 9
5.28.37-005	5
5.28.37-008	4 9
5.28.37-009	5 9
5.28.37-010	5
5.28.37-011	5 9
5.28.37-012	5 6
5.4.15-004	2 6
5.4.15-005	2 6
6.14.2-006	5 6
6.14.2-007	5 6
6.14.2-008	5 6
6.14.2-009	2 5
6.14.2-010	5 7
6.14.2-011	2 6
6.14.2-012	2 6
6.14.2-013	2 5
6.14.2-015	2 7
6.29.49-001	5 6
6.29.49-002	2 5
6.29.49-003	6 9
6.29.49-005	2 9
6.29.49-007	2 9
6.29.49-008	2 5
6.30.49-009	5 6
6.30.49-011	2 5
6.30.49-012	2 5
6.30.49-013	2 9
6.30.49-014	2 9
6.30.49-015	2 5
6.30.49-016	2 9
6.30.49-017	5 6
6.31.49-003	5 6
6.31.49-004	5 6
6.31.49-005	5 6
6.31.49-006	2 5
6.31.49-007	2 5
6.31.49-009	6 9
6.31.49-010	5 6
6.31.49-011	6 9
6.31.49-012	2 5
6.31.49-013	2 9
6.31.49-014	2 9
6.31.49-015	5 6
6.32.49-032	6 9
6.32.49-033	6 9
6.32.49-034	6 9
6.32.49-035	2 9
6.32.49-037	2
6.32.49-038	2
6.32.49-039	2 9
6.32.49-040	6 9
6.32.49-041	2
6.33.49-001	2
6.33.49-002	5 6
6.33.49-003	5 6
6.33.49-004	2 5
23-01-11	2
23-02-34	2
23-03-13	2 5
23-03-23	2 5
23-03-48	2 5
23-03-56	2 5
23-06-04	2 5
23-06-23	2 5
23-07-26	2
23-08-55	2 5
Dzherlo	2
Olympus	4 5
PC 7146-16	2
Kordia	2 6
Cristobalina	6
Vittoria	12 6
FR20T047	5
FR13T004	5 9
FR13T071	2 9
FR31T121	2 6
FR32T087	5 6
FR32T088	2
FR32T093	2 6
FR20T045	2 9
FR26T117	2
FR29T115	10 9
PC 9816-005	2 9
PC 9816-023	2 9
PC 9816-041	2 9
PC 9816-059	2 5
PC 9816-083	5 9
PC 9816-103	2 9
PC 9816-105	2
PC 9816-106	2
PC 9816-112	2
PC 9816-078	5 9
PC 9819-005	5 9
PC 9819-031	5 9
PC 9819-038	5 9
PC 9814-025	2 9
PC 9814-078	2
PC 9814-103	2 9
PC 9814-105	2
PC 9814-026	2 9
PC 9814-028	2 9
PC 9814-055	2 9
PC 9814-062	2 9
PC 9814-063	2 9
PC 9814-068	2 9
PC 9814-071	2 9
PC 9814-076	2 9
PC 9819-034	2 9
PC 9816-042	2 5
Emperor Francis	2
Black Republican	2 5
Krupnoplodnaya	2 4
Early Burlat	2 5
Venus	2
Moreau	2 5
Index	2 5
Sunburst	2 4
6.14.6-008	2 7
FR02T062	5 7
FR02T063	5 7
5.14.23.001	5
6.16.44-005	2
6.23.44-001	2 5
6.23.44-002	2
6.23.55-006	2 5
6.23.55-010	2 5
6.23.6-002	2 5
6.23.6-003	5
6.16.44-001	2
6.16.44-002	2
6.16.44-003	2 6
6.28.44-001	2 5
6.28.44-002	2 9
6.4.44-003	2 6
6.4.44-004	2 6
6.4.44-006	2 6
6.4.44-007	2 6
6.4.44-009	2 6
6.4.44-010	2 6
6.4.45-001	2
4.3.1-004	2 6
4.3.1-009	2
5.3.1-008	2 6
5.3.1-010	2 6
5.3.1-015	2
5.3.1-016	2 6
5.3.1-017	2
6.30.50-002	2 9
6.14.6-003	2 5
6.28.45-001	5
FR09T089	2 5
6.12.45-001	2 6
6.12.45-002	2 6
6.12.45-003	2 6
6.12.45-004	2 6
6.12.45-005	2 6
6.12.45-007	2 6
6.12.45-008	2 6
6.12.45-009	2 6
6.12.45-010	2 6
6.14.45-001	5 6
6.14.45-003	5 6
6.14.45-004	5 6
6.14.45-005	5 6
6.14.45-006	2 6
6.14.45-007	2 6
6.14.45-008	5 6
6.14.45-009	5 6
6.28.45-002	6 9
6.14.6-001	2
6.14.6-002	2
6.14.6-004	2 5
6.14.6-005	2
6.14.6-006	2 5
6.14.6-007	2 5
6.14.6-010	2 5
6.23.6-004	2
6.23.6-005	2
6.23.6-007	2
6.23.6-008	2
6.23.6-012	2
6.28.44-005	9
6.28.55-006	2 5
6.28.55-007	5 9
6.23.6-001	2
6.23.6-006	5 9
6.23.6-009	5
6.4.44-001	2 6
6.4.6-001	2
FR04T029	2 9
FR08T074	2 5
6.28.55-002	5 9
FR01T050	5 6
5.10.25-001	2 5
5.10.25-002	4 5
5.16.25-002	2 4
5.16.25-003	2 4
5.16.25-004	2 4
5.16.25-005	2 4
5.16.25-009	2 4
5.16.25-010	2 4
5.16.25-013	2
5.18.25-005	2 5
4.3.1-008	2 5
5.3.1-005	2 6
FR09T037	2 5
6.29.50-001	10 9
6.29.50-002	10 5
6.29.50-003	10 5
6.29.50-004	10 5
6.29.50-005	10 9
6.29.50-007	10 9
6.29.50-008	10 5
6.30.50-004	10 9
6.30.50-005	10 5
6.31.50-001	10 9
6.31.50-002	10 9
6.31.50-003	10 9
6.31.50-004	10 9
6.31.50-005	10 5
6.32.50-001	10 9
6.32.50-002	10 9
6.32.50-003	10 2
6.32.50-004	10 9
6.32.50-005	10 2
6.32.50-006	10 2
6.32.50-007	10 9
6.32.50-008	10 2
6.33.50-001	10 2
5.10.26-001	5
5.10.26-002	5
5.10.26-003	5
5.10.26-004	2 5
5.10.26-005	2 5
5.10.26-007	2
5.10.26-008	2
5.13.26-001	2
5.13.26-002	2
5.13.26-003	2 5
5.13.26-004	2 5
5.13.26-005	2
5.13.26-006	5 9
5.13.26-007	2 5
5.13.26-009	5 9
5.14.26-001	2
5.14.26-002	2
5.14.26-003	2
5.16.26-001	2 5
5.16.26-002	2
5.16.26-003	2
5.16.40-001	2
5.18.26-001	2 5
5.18.26-002	5
FR06T097	5 9
FR07T026	5 9
6.28.44-003	2 9
AA	2
PC 9816-069	5 9
PC 9816-079	5 9
PC 9816-096	2 5
PC 9816-104	5 9
PC 9816-114	2 9
PC 9817-097	2 5
4.18.15-010	2
4.18.15-042	5 6
4.18.15-047	2
4.18.15-048	2
4.3.1-003	2
4.3.1-005	2
4.3.1-006	6
4.3.1-007	2 6
5.3.1-009	6
5.3.1-011	2
5.3.1-012	2 6
5.3.1-013	6
5.3.1-014	6
5.4.15-001	2 6
5.4.15-002	2
5.4.15-003	2
FR01T070	2 6
FR49T083	2 5
5.16.17-003	2
5.16.25-006	2
5.16.25-008	2
5.16.25-012	2
5.20.6-001	2 5
6.16.44-008	2
6.4.45-003	2
6.4.6-004	2
6.4.6-006	2
6.4.6-007	2
6.4.6-008	2 5
6.4.6-009	2 5
5.16.17-001	2
5.16.17-004	2 4
6.14.17-001	2 5
6.14.17-002	2 4
6.14.17-003	4 5
6.14.17-004	2 5
6.14.17-005	4 5
FR02T024	2
4.14.17-001	2 5
5.13.26-008	2 5
6.28.44-004	2 9
4.3.1-001	2 5
5.3.1-007	2 5
5.3.1-018	2 5
5.10.40-001	2
5.10.40-002	2
5.10.40-003	2 5
5.10.40-004	2
5.10.40-005	2 5
5.10.40-007	2 5
5.10.40-008	2
5.10.40-009	2 5
5.10.40-010	2
5.10.40-011	2
5.10.40-012	2 5
5.10.40-013	2
5.10.40-014	2 5
5.10.40-015	2
5.10.40-016	2
5.10.40-017	2 5
5.13.40-002	2
5.13.40-003	2 9
5.13.40-004	2 9
5.16.40-003	2
5.16.40-004	2
6.30.50-001	2 5
6.30.50-003	2 9
6.10.55-001	5 6
6.10.55-002	12 5
6.10.55-003	2 6
6.10.55-004	2 6
6.10.55-005	5 6
6.10.55-006	12 5
6.10.55-007	2 6
6.10.55-008	12 2
6.10.55-009	5 6
6.10.55-010	12 2
6.16.55-001	12 2
6.16.55-002	12 2
6.23.17-001	12 5
6.23.55-002	2 6
6.23.55-005	12 2
6.23.55-007	5 6
6.23.55-008	12 5
6.28.55-001	5 6
6.28.55-003	12 9
6.28.55-004	6 9
6.28.55-005	12 9
5.13.40-001	5 9
5.16.25-001	2 9
5.18.25-004	2 5
5.3.1-006	2
6.16.44-004	2
6.16.44-006	2
6.16.44-007	2 5
6.16.44-009	2 9
6.23.17-003	2 5
6.23.17-004	5 9
Bertiolle	2 6
Napoleon	2 5

Map Positions


Haplotype Block	Map Name	Linkage Group	Start	Stop
Pav-HB-01-25	Sweet Cherry-RosBREED-1.6K-2019	1	91.82	92.26

Projects


Project Name
RosBREED_Sweet_Cherry_CRS_Haplotype_2020

Haplotypes

Marker	2	3	4	5	6	7	8	9	10	11	12	13
RosBREED_snp_sweet_cherry_Pp1_30967575	A	A	A	A	A	B	A	B	B	A	B	A
RosBREED_snp_sweet_cherry_Pp1_31049557	A	A	A	A	A	B	A	A	A	A	A	A
RosBREED_snp_sweet_cherry_Pp1_31301016	B	B	A	B	A	A	A	B	A	A	B	A
RosBREED_snp_sweet_cherry_Pp1_31467287	B	B	B	B	A	B	B	B	B	B	A	A
RosBREED_snp_tart_cherry_a_Pp1_30741454	B	B	B	B	B	A	B	B	B	B	B	A
RosCOS2354-264_snp_sweet_cherry_Pp1_30895488	A	-	A	B	A	B	B	A	A	-	A	B

Alignments

Feature Name	Type	Location	Analysis
Pp01	chromosome	Pp01:32607806..32855414.	Prunus persica Whole Genome Assembly v2.0 & Annotation v2.1 (v2.0.a1)