Pav-HB-08-13

Haplotype Block Overview

Name	Pav-HB-08-13
Species	Prunus avium
Stock Haplotype	[view all 518]
Haplotype	[view all]

Publications


Year	Publication
2019	Vanderzande S, Howard NP, Cai L, Da Silva Linge C, Antanaviciute L, Bink MCAM, Kruisselbrink JW, Bassil N, Gasic K, Iezzoni A, Van de Weg E, Peace C. High-quality, genome-wide SNP genotypic data for pedigreed germplasm of the diploid outbreeding species apple, peach, and sweet cherry through a common workflow. PloS one. 2019; 14(6):e0210928.

Stock Haplotype

Name	Haplotype
Summit	2 3
Lambert	2 3
Regina	12 2
Ambrunes	4 5
Lapins	2 4
Stella	2
Sweetheart	2 3
Van	3 4
Schneiders	2 3
Bing	2 3
Rainier	2 4
5.18.25-001	2 3
5.3.1-001	4
5.3.1-002	3 4
Benton	2 4
Brooks	3 4
Cashmere	2 3
Chelan	2 3
Chinook	3
Cowiche	2 4
Gil Peck	3 7
Glacier	2 4
Kiona	2 3
Mildew Immune Mazzard #17	12 13
Mildew Immune Mazzard #23	13 14
Newstar	2 4
NY 54	10 15
PMR-1	2 4
Sato Nashiki	2 4
Schmidt	2 3
Selah	2 3
Tieton	2 3
Ulster	3 7
Vic	2
Windsor	3 4
23_1_47	15 2
23_2_46	15 2
23_3_24	2
23_3_28	15 2
23_3_40	15 2
23_5_17	10 3
23_8_24	10 2
23_8_45	10 3
4.10.19-001	2 3
4.10.19-002	2 3
4.10.19-003	2
4.10.19-004	2
4.10.19-005	2
4.10.19-006	2
4.10.19-008	3 4
4.10.19-009	2 3
4.10.19-010	2
4.10.19-011	2
4.10.2-001	4 5
4.10.2-002	4 5
4.10.2-004	4 5
4.10.2-005	2 5
4.10.2-006	4
4.10.2-008	2 4
4.10.2-009	2 5
4.10.2-010	4
4.10.5-001	2 4
4.10.5-002	3 4
4.10.5-003	2 3
4.10.5-004	2
4.10.5-005	2 4
4.10.5-006	2
4.10.5-015	4
4.10.5-016	2 3
4.10.5-018	2 3
4.10.5-019	2 3
4.10.5-020	3 4
4.10.5-028	3 4
4.10.5-029	2 3
4.10.5-030	2
4.16.2-001	3 4
4.18.15-001	2
4.18.15-002	12 4
4.18.15-003	2 4
4.18.15-004	2 4
4.18.15-005	12 4
4.18.15-006	12 2
4.18.15-007	3 4
4.18.15-009	2
4.18.15-011	2 4
4.18.15-012	12 4
4.18.15-013	12 2
4.18.15-014	2
4.18.15-015	12 4
4.18.15-016	2
4.18.15-028	12 4
4.18.15-030	2
4.18.15-039	12 4
4.18.15-040	12 2
4.18.15-043	12 2
4.18.2-005	4 5
4.18.2-007	2 5
4.18.2-008	2 5
4.18.2-010	4
4.18.2-015	4
4.18.2-016	2 4
4.18.2-018	4
4.18.2-019	2 4
4.18.2-020	4 5
4.18.2-024	2 5
4.18.2-027	2 5
4.18.2-028	4 5
5.12.5-005	3
5.12.5-007	3
5.12.5-008	2 3
5.12.5-009	3
5.12.5-010	2 3
5.12.5-011	2
5.12.5-019	2 3
5.12.5-020	2
5.12.5-021	2
5.12.5-022	2 3
5.14.15-003	12 4
5.14.15-004	12 2
5.14.15-005	2
5.14.15-006	12 4
5.14.15-007	2
5.14.15-013	12 4
5.14.15-014	4
5.14.15-015	12 4
5.14.15-016	12 2
5.14.15-017	12 4
5.14.15-018	2
5.14.15-019	12 4
5.14.15-020	12 4
5.14.23-003	2
5.14.23-004	4
5.14.23-006	4
5.23.15-001	2
5.23.15-002	2
5.23.2-001	2 5
5.23.2-002	2 4
5.23.2-003	2 5
5.28.15-001	12 2
5.28.15-002	12 2
5.28.15-003	2
5.28.15-004	2
5.28.15-005	12 4
5.28.15-006	2 4
5.28.15-007	12 4
5.28.15-008	12 2
5.28.15-009	2
5.28.15-010	2
5.28.15-011	2 4
5.28.15-012	12 2
5.28.15-013	12 4
5.28.37-001	2 3
5.28.37-002	3 4
5.28.37-003	2 4
5.28.37-004	2
5.28.37-005	3 4
5.28.37-008	3 4
5.28.37-009	2
5.28.37-010	2
5.28.37-011	2
5.28.37-012	3 4
5.4.15-004	2 3
5.4.15-005	2
6.14.2-006	4 5
6.14.2-007	4
6.14.2-008	2 4
6.14.2-009	2 3
6.14.2-010	2 4
6.14.2-011	4 5
6.14.2-012	4
6.14.2-013	11 4
6.14.2-015	4 5
6.29.49-001	13 4
6.29.49-002	12 4
6.29.49-003	12 2
6.29.49-005	12 2
6.29.49-007	13 2
6.29.49-008	12 4
6.30.49-009	13 4
6.30.49-011	12 4
6.30.49-012	12 4
6.30.49-013	13 2
6.30.49-014	12 4
6.30.49-015	12 2
6.30.49-016	12
6.30.49-017	13 4
6.31.49-003	12 2
6.31.49-004	12 2
6.31.49-005	12 2
6.31.49-006	13 2
6.31.49-007	13 2
6.31.49-009	13 2
6.31.49-010	13 2
6.31.49-011	13 2
6.31.49-012	12 2
6.31.49-013	13 2
6.31.49-014	13 2
6.31.49-015	13 2
6.32.49-032	12 2
6.32.49-033	13 2
6.32.49-034	13 2
6.32.49-035	13 2
6.32.49-037	13 2
6.32.49-038	12 2
6.32.49-039	13 2
6.32.49-040	12 2
6.32.49-041	13 2
6.33.49-001	13 2
6.33.49-002	13 2
6.33.49-003	12 2
6.33.49-004	12 2
23-01-11	15 3
23-02-34	10 2
23-03-13	10 2
23-03-23	15 3
23-03-48	10
23-03-56	15 2
23-06-04	15 2
23-06-23	15 2
23-07-26	10 3
23-08-55	10 2
Dzherlo	11 3
Olympus	2 4
PC 7146-16	2 3
Kordia	3 4
Cristobalina	10 9
Vittoria	16 3
FR20T047	2 3
FR13T004	2 3
FR13T071	2 4
FR31T121	2 3
FR32T087	4
FR32T088	4
FR32T093	4
FR20T045	2
FR26T117	2 3
FR29T115	14 2
PC 9816-005	4
PC 9816-023	2
PC 9816-041	2 4
PC 9816-059	2 4
PC 9816-083	2 4
PC 9816-103	4
PC 9816-105	4
PC 9816-106	2
PC 9816-112	2
PC 9816-078	4
PC 9819-005	3 4
PC 9819-031	2 4
PC 9819-038	4
PC 9814-025	2 4
PC 9814-078	2 3
PC 9814-103	2
PC 9814-105	3 4
PC 9814-026	2 3
PC 9814-028	2 3
PC 9814-055	3 4
PC 9814-062	3 4
PC 9814-063	2 4
PC 9814-068	2 3
PC 9814-071	3 4
PC 9814-076	2
PC 9819-034	2 3
PC 9816-042	2 4
Emperor Francis	2 3
Black Republican	3
Krupnoplodnaya	2 4
Early Burlat	3 4
Venus	10 4
Moreau	3 4
Index	2
Sunburst	2
6.14.6-008	2 4
FR02T062	2 5
FR02T063	2 5
5.14.23.001	2 4
6.16.44-005	2 4
6.23.44-001	2
6.23.44-002	2 4
6.23.55-006	2
6.23.55-010	2
6.23.6-002	2 4
6.23.6-003	2 4
6.16.44-001	2 4
6.16.44-002	4
6.16.44-003	3 4
6.28.44-001	2 4
6.28.44-002	2 4
6.4.44-003	2 4
6.4.44-004	3 4
6.4.44-006	2 4
6.4.44-007	2 4
6.4.44-009	3 4
6.4.44-010	2 4
6.4.45-001	2 4
4.3.1-004	2 3
4.3.1-009	3
5.3.1-008	2 3
5.3.1-010	3 4
5.3.1-015	3
5.3.1-016	3
5.3.1-017	2 4
6.30.50-002	3
6.14.6-003	2
6.28.45-001	2
FR09T089	2 3
6.12.45-001	2 9
6.12.45-002	2 9
6.12.45-003	10 2
6.12.45-004	2 9
6.12.45-005	10 3
6.12.45-007	10 2
6.12.45-008	10 3
6.12.45-009	10 3
6.12.45-010	10 2
6.14.45-001	10 2
6.14.45-003	4 9
6.14.45-004	2 9
6.14.45-005	10 2
6.14.45-006	10 4
6.14.45-007	10 2
6.14.45-008	10 2
6.14.45-009	4 9
6.28.45-002	2 9
6.14.6-001	11 4
6.14.6-002	11 4
6.14.6-004	11 4
6.14.6-005	11 2
6.14.6-006	3 4
6.14.6-007	3 4
6.14.6-010	2 3
6.23.6-004	2 3
6.23.6-005	3 4
6.23.6-007	11 4
6.23.6-008	11 4
6.23.6-012	3 4
6.28.44-005	4
6.28.55-006	2
6.28.55-007	4
6.23.6-001	2 4
6.23.6-006	2
6.23.6-009	4
6.4.44-001	2 3
6.4.6-001	3 34
FR04T029	2 3
FR08T074	2 4
6.28.55-002	2
FR01T050	2 4
5.10.25-001	2 4
5.10.25-002	4
5.16.25-002	2
5.16.25-003	2 3
5.16.25-004	2 3
5.16.25-005	2 4
5.16.25-009	2
5.16.25-010	2 3
5.16.25-013	2 3
5.18.25-005	2
4.3.1-008	4
5.3.1-005	4
FR09T037	2 4
6.29.50-001	14 2
6.29.50-002	13 4
6.29.50-003	13 2
6.29.50-004	13 4
6.29.50-005	14 2
6.29.50-007	14 2
6.29.50-008	13 4
6.30.50-004	4
6.30.50-005	14 4
6.31.50-001	13 2
6.31.50-002	14 2
6.31.50-003	14 2
6.31.50-004	14 2
6.31.50-005	13 2
6.32.50-001	13 2
6.32.50-002	13 2
6.32.50-003	14 2
6.32.50-004	13 2
6.32.50-005	13 2
6.32.50-006	14 2
6.32.50-007	14 2
6.32.50-008	14 2
6.33.50-001	13 2
5.10.26-001	2 3
5.10.26-002	4
5.10.26-003	3 4
5.10.26-004	2 3
5.10.26-005	4
5.10.26-007	4
5.10.26-008	4
5.13.26-001	2 3
5.13.26-002	3 4
5.13.26-003	2 4
5.13.26-004	2 4
5.13.26-005	2
5.13.26-006	2 4
5.13.26-007	3 4
5.13.26-009	2 4
5.14.26-001	2 4
5.14.26-002	2 4
5.14.26-003	2 4
5.16.26-001	2 3
5.16.26-002	2 4
5.16.26-003	3
5.16.40-001	3
5.18.26-001	2 4
5.18.26-002	3 4
FR06T097	3 4
FR07T026	2 4
6.28.44-003	2 4
AA	2 4
PC 9816-069	2 4
PC 9816-079	2 4
PC 9816-096	2 4
PC 9816-104	2
PC 9816-114	2
PC 9817-097	2
4.18.15-010	2
4.18.15-042	2
4.18.15-047	12 4
4.18.15-048	2
4.3.1-003	12 4
4.3.1-005	12 3
4.3.1-006	2 4
4.3.1-007	12
5.3.1-009	2 3
5.3.1-011	2 4
5.3.1-012	3
5.3.1-013	2 4
5.3.1-014	12 3
5.4.15-001	2 3
5.4.15-002	12 3
5.4.15-003	2
FR01T070	12 2
FR49T083	2 3
5.16.17-003	3
5.16.25-006	2 3
5.16.25-008	2 3
5.16.25-012	2 3
5.20.6-001	2 4
6.16.44-008	2 3
6.4.45-003	2 3
6.4.6-004	2 3
6.4.6-006	2 3
6.4.6-007	2 3
6.4.6-008	2 3
6.4.6-009	3 4
5.16.17-001	2
5.16.17-004	2
6.14.17-001	2 4
6.14.17-002	2 4
6.14.17-003	2
6.14.17-004	2 4
6.14.17-005	2 4
FR02T024	2
4.14.17-001	2
5.13.26-008	2 4
6.28.44-004	2 3
4.3.1-001	3
5.3.1-007	3 4
5.3.1-018	3 4
5.10.40-001	4
5.10.40-002	10 4
5.10.40-003	10 2
5.10.40-004	2 4
5.10.40-005	10 2
5.10.40-007	10 2
5.10.40-008	10 2
5.10.40-009	2 4
5.10.40-010	10 4
5.10.40-011	2 4
5.10.40-012	10 4
5.10.40-013	10 2
5.10.40-014	4
5.10.40-015	10 4
5.10.40-016	4
5.10.40-017	10 4
5.13.40-002	4
5.13.40-003	10 2
5.13.40-004	4
5.16.40-003	10 2
5.16.40-004	3 4
6.30.50-001	10 4
6.30.50-003	10 2
6.10.55-001	16 4
6.10.55-002	16 2
6.10.55-003	3 4
6.10.55-004	16 4
6.10.55-005	3 4
6.10.55-006	3 4
6.10.55-007	3 4
6.10.55-008	16 4
6.10.55-009	2 3
6.10.55-010	2 3
6.16.55-001	3
6.16.55-002	3
6.23.17-001	16 2
6.23.55-002	16 4
6.23.55-005	2 3
6.23.55-007	16 2
6.23.55-008	2 3
6.28.55-001	2 3
6.28.55-003	16 4
6.28.55-004	16 4
6.28.55-005	16 2
5.13.40-001	2
5.16.25-001	3 4
5.18.25-004	2
5.3.1-006	22 3
6.16.44-004	2 3
6.16.44-006	2 4
6.16.44-007	3
6.16.44-009	3 4
6.23.17-003	2
6.23.17-004	2
Bertiolle	4
Napoleon	2 3

Map Positions


Haplotype Block	Map Name	Linkage Group	Start	Stop
Pav-HB-08-13	Sweet Cherry-RosBREED-1.6K-2019	8	55.61	59.08

Projects


Project Name
RosBREED_Sweet_Cherry_CRS_Haplotype_2020

Haplotypes

Marker	2	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	21	22	23	24	25	26	27	28	29	30	31	32	33	34	35
RosBREED_snp_sweet_cherry_Pp8_14199896	A	A	A	A	A	A	A	B	A	A	B	B	B	B	A	B	B	A	-	-	A	A	A	B	A	A	A	A	A	B	A	A	A	A
RosBREED_snp_sweet_cherry_Pp8_14357714	A	A	B	B	B	A	A	B	A	A	A	A	A	A	A	A	A	B	B	A	A	A	A	A	B	A	B	A	A	A	A	B	B	A
RosBREED_snp_sweet_cherry_Pp8_14374888	B	A	A	A	A	B	A	A	A	B	B	B	B	A	B	A	B	A	A	B	B	B	B	B	A	B	B	B	B	B	A	A	B	A
RosBREED_snp_sweet_cherry_Pp8_14403194	A	A	A	A	A	B	A	A	A	B	B	B	B	A	B	A	A	A	-	-	B	A	A	B	A	A	A	A	A	B	A	A	A	A
RosBREED_snp_sweet_cherry_Pp8_14841426	A	A	B	B	B	A	A	B	A	A	A	A	B	A	A	A	A	A	B	A	A	A	A	A	B	A	A	B	A	B	B	A	B	A
RosBREED_snp_sweet_cherry_Pp8_14888590	A	B	B	B	-	A	A	B	B	B	B	B	A	B	B	B	A	A	B	A	B	B	-	B	B	A	A	B	B	A	B	B	B	-
RosBREED_snp_sweet_cherry_Pp8_14923589	B	A	B	B	B	B	B	B	A	A	A	B	A	A	B	A	B	B	B	B	A	A	-	A	-	-	B	B	B	A	B	A	B	-
RosBREED_snp_sweet_cherry_Pp8_15026598	B	B	B	A	B	A	B	B	A	B	A	B	B	B	B	A	B	B	B	B	A	B	B	B	B	B	B	B	B	B	B	B	B	B
RosBREED_snp_tart_cherry_f_Pp8_14548705	B	B	B	B	B	B	B	A	B	B	B	B	A	B	B	B	B	B	B	B	B	B	B	B	B	B	B	B	B	B	B	B	B	B

Alignments

Feature Name	Type	Location	Analysis
Pp08	chromosome	Pp08:17286835..17858840.	Prunus persica Whole Genome Assembly v2.0 & Annotation v2.1 (v2.0.a1)