Pav-HB-08-10

Haplotype Block Overview

Name	Pav-HB-08-10
Species	Prunus avium
Stock Haplotype	[view all 518]
Haplotype	[view all]

Publications


Year	Publication
2019	Vanderzande S, Howard NP, Cai L, Da Silva Linge C, Antanaviciute L, Bink MCAM, Kruisselbrink JW, Bassil N, Gasic K, Iezzoni A, Van de Weg E, Peace C. High-quality, genome-wide SNP genotypic data for pedigreed germplasm of the diploid outbreeding species apple, peach, and sweet cherry through a common workflow. PloS one. 2019; 14(6):e0210928.

Stock Haplotype

Name	Haplotype
Summit	4 6
Lambert	4 5
Regina	13 2
Ambrunes	6
Lapins	4 6
Stella	2 4
Sweetheart	4
Van	4 6
Schneiders	2 4
Bing	2 4
Rainier	4 6
5.18.25-001	2 4
5.3.1-001	6
5.3.1-002	4 6
Benton	4 6
Brooks	4 6
Cashmere	2 4
Chelan	2 4
Chinook	4
Cowiche	2
Gil Peck	4
Glacier	4 6
Kiona	4
Mildew Immune Mazzard #17	11 12
Mildew Immune Mazzard #23	10 11
Newstar	4 6
NY 54	6 9
PMR-1	2 6
Sato Nashiki	2 6
Schmidt	2 3
Selah	4 6
Tieton	2 4
Ulster	4
Vic	2
Windsor	5 6
23_1_47	2 6
23_2_46	2 6
23_3_24	2 6
23_3_28	2 6
23_3_40	2 6
23_5_17	3 9
23_8_24	2 9
23_8_45	3 9
4.10.19-001	4
4.10.19-002	4
4.10.19-003	2 4
4.10.19-004	2 4
4.10.19-005	2 4
4.10.19-006	2 4
4.10.19-008	4 6
4.10.19-009	4
4.10.19-010	2 4
4.10.19-011	2 4
4.10.2-001	6
4.10.2-002	6
4.10.2-004	6
4.10.2-005	4 6
4.10.2-006	6
4.10.2-008	4
4.10.2-009	4 6
4.10.2-010	6
4.10.5-001	2 6
4.10.5-002	4 6
4.10.5-003	4
4.10.5-004	2 4
4.10.5-005	2 6
4.10.5-006	2 4
4.10.5-015	6
4.10.5-016	4
4.10.5-018	4
4.10.5-019	4
4.10.5-020	2 6
4.10.5-028	4 6
4.10.5-029	4
4.10.5-030	4
4.16.2-001	4 6
4.18.15-001	2 4
4.18.15-002	13 6
4.18.15-003	2 6
4.18.15-004	2 6
4.18.15-005	13 6
4.18.15-006	13 4
4.18.15-007	2 6
4.18.15-009	2 6
4.18.15-011	2 6
4.18.15-012	13 6
4.18.15-013	13 4
4.18.15-014	2 4
4.18.15-015	13 6
4.18.15-016	2 4
4.18.15-028	13 6
4.18.15-030	2 4
4.18.15-039	13 6
4.18.15-040	13 4
4.18.15-043	13 4
4.18.2-005	6
4.18.2-007	4 6
4.18.2-008	4 6
4.18.2-010	6
4.18.2-015	6
4.18.2-016	4 6
4.18.2-018	6
4.18.2-019	4 6
4.18.2-020	6
4.18.2-024	4 6
4.18.2-027	4 6
4.18.2-028	6
5.12.5-005	4
5.12.5-007	2 4
5.12.5-008	4
5.12.5-009	4
5.12.5-010	2 4
5.12.5-011	2 4
5.12.5-019	2 4
5.12.5-020	2 4
5.12.5-021	2 4
5.12.5-022	2 4
5.14.15-003	13 6
5.14.15-004	13 4
5.14.15-005	2 4
5.14.15-006	13 6
5.14.15-007	2 4
5.14.15-013	13 6
5.14.15-014	13 6
5.14.15-015	13 4
5.14.15-016	13 4
5.14.15-017	2 6
5.14.15-018	2 4
5.14.15-019	2 6
5.14.15-020	13 6
5.14.23-003	4 6
5.14.23-004	6
5.14.23-006	6
5.23.15-001	4
5.23.15-002	2 4
5.23.2-001	4 6
5.23.2-002	4 6
5.23.2-003	4 6
5.28.15-001	13 2
5.28.15-002	13 2
5.28.15-003	2
5.28.15-004	2
5.28.15-005	13 2
5.28.15-006	2
5.28.15-007	13 2
5.28.15-008	13 2
5.28.15-009	2
5.28.15-010	13 2
5.28.15-011	2
5.28.15-012	13 2
5.28.15-013	13 2
5.28.37-001	2 4
5.28.37-002	2 4
5.28.37-003	2 6
5.28.37-004	2 6
5.28.37-005	2 4
5.28.37-008	2 4
5.28.37-009	2 6
5.28.37-010	2 6
5.28.37-011	2 6
5.28.37-012	2 6
5.4.15-004	2 4
5.4.15-005	2
6.14.2-006	6
6.14.2-007	6
6.14.2-008	4 6
6.14.2-009	3 4
6.14.2-010	4 6
6.14.2-011	6
6.14.2-012	6
6.14.2-013	3 6
6.14.2-015	6
6.29.49-001	12 4
6.29.49-002	11 6
6.29.49-003	11 4
6.29.49-005	11 4
6.29.49-007	12 4
6.29.49-008	11 6
6.30.49-009	12 6
6.30.49-011	11 6
6.30.49-012	11 6
6.30.49-013	12 4
6.30.49-014	11 6
6.30.49-015	11 4
6.30.49-016	11 4
6.30.49-017	12 6
6.31.49-003	12 6
6.31.49-004	11 6
6.31.49-005	11 4
6.31.49-006	12 4
6.31.49-007	12 6
6.31.49-009	12 4
6.31.49-010	12 4
6.31.49-011	12 4
6.31.49-012	11 6
6.31.49-013	12 4
6.31.49-014	12 4
6.31.49-015	12 6
6.32.49-032	11 4
6.32.49-033	12 4
6.32.49-034	12 4
6.32.49-035	12 4
6.32.49-037	12 4
6.32.49-038	11 4
6.32.49-039	12 2
6.32.49-040	11 2
6.32.49-041	12 4
6.33.49-001	11 2
6.33.49-002	11 4
6.33.49-003	11 4
6.33.49-004	11 2
23-01-11	3 6
23-02-34	2 9
23-03-13	2 9
23-03-23	3 6
23-03-48	3 9
23-03-56	2 9
23-06-04	2 6
23-06-23	2 9
23-07-26	3 9
23-08-55	2 9
Dzherlo	10 3
Olympus	5 6
PC 7146-16	2 4
Kordia	4 6
Cristobalina	9
Vittoria	4 6
FR20T047	2 4
FR13T004	4
FR13T071	4 6
FR31T121	4
FR32T087	6 7
FR32T088	6 7
FR32T093	6 8
FR20T045	2
FR26T117	4
FR29T115	11 2
PC 9816-005	6
PC 9816-023	4 6
PC 9816-041	2 6
PC 9816-059	4 6
PC 9816-083	2 6
PC 9816-103	6
PC 9816-105	6
PC 9816-106	2 4
PC 9816-112	2 4
PC 9816-078	6
PC 9819-005	4 6
PC 9819-031	2 6
PC 9819-038	4 6
PC 9814-025	2 6
PC 9814-078	2 4
PC 9814-103	2
PC 9814-105	4 6
PC 9814-026	2 4
PC 9814-028	2 4
PC 9814-055	4 6
PC 9814-062	4 6
PC 9814-063	2 6
PC 9814-068	2 4
PC 9814-071	4 6
PC 9814-076	2 4
PC 9819-034	2 4
PC 9816-042	3 6
Emperor Francis	2 3
Black Republican	4
Krupnoplodnaya	2 6
Early Burlat	4 6
Venus	6 9
Moreau	4 6
Index	2 4
Sunburst	5 6
6.14.6-008	4 6
FR02T062	4 6
FR02T063	4 6
5.14.23.001	4 6
6.16.44-005	4 6
6.23.44-001	4
6.23.44-002	4 6
6.23.55-006	4
6.23.55-010	4
6.23.6-002	4 6
6.23.6-003	4 6
6.16.44-001	4 8
6.16.44-002	6 8
6.16.44-003	6 7
6.28.44-001	2 7
6.28.44-002	2 8
6.4.44-003	2 8
6.4.44-004	4 8
6.4.44-006	2 7
6.4.44-007	2 8
6.4.44-009	4 7
6.4.44-010	2 8
6.4.45-001	2 7
4.3.1-004	2 4
4.3.1-009	4
5.3.1-008	4
5.3.1-010	4 6
5.3.1-015	2 4
5.3.1-016	4
5.3.1-017	2 6
6.30.50-002	4
6.14.6-003	2 4
6.28.45-001	2
FR09T089	2 4
6.12.45-001	4 9
6.12.45-002	4 9
6.12.45-003	4 9
6.12.45-004	4 9
6.12.45-005	4 9
6.12.45-007	4 9
6.12.45-008	4 9
6.12.45-009	4 9
6.12.45-010	4 9
6.14.45-001	6 9
6.14.45-003	6 9
6.14.45-004	4 9
6.14.45-005	4 9
6.14.45-006	6 9
6.14.45-007	4 9
6.14.45-008	4 9
6.14.45-009	6 9
6.28.45-002	2 9
6.14.6-001	10 6
6.14.6-002	10 6
6.14.6-004	10 6
6.14.6-005	10 4
6.14.6-006	3 6
6.14.6-007	3 6
6.14.6-010	10 4
6.23.6-004	3 4
6.23.6-005	3 6
6.23.6-007	10 6
6.23.6-008	10 6
6.23.6-012	3 6
6.28.44-005	2 6
6.28.55-006	2
6.28.55-007	2 6
6.23.6-001	2 6
6.23.6-006	4
6.23.6-009	6
6.4.44-001	4
6.4.6-001	4 6
FR04T029	4
FR08T074	4 6
6.28.55-002	2 4
FR01T050	4 6
5.10.25-001	2 6
5.10.25-002	6
5.16.25-002	2 6
5.16.25-003	6
5.16.25-004	6
5.16.25-005	4 6
5.16.25-009	2 4
5.16.25-010	2 6
5.16.25-013	2 6
5.18.25-005	2 4
4.3.1-008	6
5.3.1-005	6
FR09T037	4 6
6.29.50-001	11 4
6.29.50-002	6
6.29.50-003	10 4
6.29.50-004	10 6
6.29.50-005	11 4
6.29.50-007	11 4
6.29.50-008	10 6
6.30.50-004	10 6
6.30.50-005	11 6
6.31.50-001	10 4
6.31.50-002	11 4
6.31.50-003	11 4
6.31.50-004	11 4
6.31.50-005	10 4
6.32.50-001	10 2
6.32.50-002	10 2
6.32.50-003	11 4
6.32.50-004	10 4
6.32.50-005	10 4
6.32.50-006	11 2
6.32.50-007	11 2
6.32.50-008	11 4
6.33.50-001	10 4
5.10.26-001	4
5.10.26-002	6
5.10.26-003	4 6
5.10.26-004	4
5.10.26-005	6
5.10.26-007	6
5.10.26-008	6
5.13.26-001	2 4
5.13.26-002	4 6
5.13.26-003	2 6
5.13.26-004	2 6
5.13.26-005	2 4
5.13.26-006	6
5.13.26-007	4 6
5.13.26-009	2 6
5.14.26-001	4 6
5.14.26-002	4 6
5.14.26-003	4 6
5.16.26-001	4
5.16.26-002	4 6
5.16.26-003	4 6
5.16.40-001	4 6
5.18.26-001	4 6
5.18.26-002	4 6
FR06T097	4 6
FR07T026	4 6
6.28.44-003	2 6
AA	4 6
PC 9816-069	4 6
PC 9816-079	4 6
PC 9816-096	4 6
PC 9816-104	4 6
PC 9816-114	2 4
PC 9817-097	2 4
4.18.15-010	2 4
4.18.15-042	2 4
4.18.15-047	13 6
4.18.15-048	2 6
4.3.1-003	13 6
4.3.1-005	13 4
4.3.1-006	2 4
4.3.1-007	13 6
5.3.1-009	2 4
5.3.1-011	2 6
5.3.1-012	13 4
5.3.1-013	2 6
5.3.1-014	13 4
5.4.15-001	2
5.4.15-002	4
5.4.15-003	13 4
FR01T070	13 4
FR49T083	2 4
5.16.17-003	6
5.16.25-006	4 6
5.16.25-008	4 6
5.16.25-012	4 6
5.20.6-001	4 6
6.16.44-008	4 6
6.4.45-003	4
6.4.6-004	4 6
6.4.6-006	4 6
6.4.6-007	6
6.4.6-008	4 6
6.4.6-009	6
5.16.17-001	4 5
5.16.17-004	4 6
6.14.17-001	5 6
6.14.17-002	5 6
6.14.17-003	4 6
6.14.17-004	6
6.14.17-005	6
FR02T024	4 6
4.14.17-001	4
5.13.26-008	2 6
6.28.44-004	2 4
4.3.1-001	4 6
5.3.1-007	4 6
5.3.1-018	4 6
5.10.40-001	6
5.10.40-002	6 9
5.10.40-003	4 9
5.10.40-004	4 6
5.10.40-005	4 6
5.10.40-007	4 9
5.10.40-008	4 9
5.10.40-009	4 6
5.10.40-010	6 9
5.10.40-011	4 6
5.10.40-012	6 9
5.10.40-013	4 9
5.10.40-014	6
5.10.40-015	6 9
5.10.40-016	6
5.10.40-017	6 9
5.13.40-002	6
5.13.40-003	2 9
5.13.40-004	6
5.16.40-003	4 9
5.16.40-004	6
6.30.50-001	6 9
6.30.50-003	4 9
6.10.55-001	6
6.10.55-002	4 6
6.10.55-003	4 6
6.10.55-004	6
6.10.55-005	4 6
6.10.55-006	4 6
6.10.55-007	4 6
6.10.55-008	6
6.10.55-009	4
6.10.55-010	4
6.16.55-001	4 6
6.16.55-002	4 6
6.23.17-001	4 6
6.23.55-002	6
6.23.55-005	4
6.23.55-007	4 6
6.23.55-008	4
6.28.55-001	2 4
6.28.55-003	2 6
6.28.55-004	2 6
6.28.55-005	2 6
5.13.40-001	2 4
5.16.25-001	6
5.18.25-004	4 6
5.3.1-006	4 9
6.16.44-004	4 6
6.16.44-006	4 8
6.16.44-007	3 6
6.16.44-009	2 6
6.23.17-003	2 4
6.23.17-004	4
Bertiolle	7 8
Napoleon	2 4

Map Positions


Haplotype Block	Map Name	Linkage Group	Start	Stop
Pav-HB-08-10	Sweet Cherry-RosBREED-1.6K-2019	8	39.77	41.86

Projects


Project Name
RosBREED_Sweet_Cherry_CRS_Haplotype_2020

Haplotypes

Marker	2	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20
RosBREED_snp_sweet_cherry_Pp8_12239408	A	A	B	B	B	B	B	B	B	A	A	B	B	A	A	B	A	B	B
RosBREED_snp_sweet_cherry_Pp8_12400779	B	B	B	B	B	B	B	B	A	B	B	A	B	B	B	B	B	B	B
RosBREED_snp_sweet_cherry_Pp8_12634796	B	A	A	B	A	B	A	B	B	B	B	B	B	B	A	A	B	B	B
RosBREED_snp_sweet_cherry_Pp8_12975714	B	B	B	B	B	B	B	B	B	A	B	A	B	B	B	B	A	A	B
RosBREED_snp_tart_cherry_a_Pp8_12123402	A	B	A	B	A	A	B	B	B	A	A	B	-	-	A	A	A	B	A
RosCOS0530-260_snp_sweet_cherry_Pp8_12225359	A	A	A	A	A	A	B	B	A	A	A	A	B	A	A	A	A	A	A
RosCOS1154-267_snp_sweet_cherry_Pp8_12227080	B	B	A	B	B	B	A	A	B	A	A	B	A	B	B	-	B	B	A

Alignments

Feature Name	Type	Location	Analysis
Pp08	chromosome	Pp08:14621067..14742331.	Prunus persica Whole Genome Assembly v2.0 & Annotation v2.1 (v2.0.a1)