Pav-HB-08-1

Haplotype Block Overview

Name	Pav-HB-08-1
Species	Prunus avium
Stock Haplotype	[view all 518]
Haplotype	[view all]

Publications


Year	Publication
2019	Vanderzande S, Howard NP, Cai L, Da Silva Linge C, Antanaviciute L, Bink MCAM, Kruisselbrink JW, Bassil N, Gasic K, Iezzoni A, Van de Weg E, Peace C. High-quality, genome-wide SNP genotypic data for pedigreed germplasm of the diploid outbreeding species apple, peach, and sweet cherry through a common workflow. PloS one. 2019; 14(6):e0210928.

Stock Haplotype

Name	Haplotype
Summit	2
Lambert	2 5
Regina	2 5
Ambrunes	2
Lapins	2 6
Stella	2
Sweetheart	2
Van	2 6
Schneiders	2 5
Bing	4
Rainier	4 6
5.18.25-001	2
5.3.1-001	2 6
5.3.1-002	2 6
Benton	2
Brooks	2 6
Cashmere	2
Chelan	2
Chinook	2 4
Cowiche	2 3
Gil Peck	2
Glacier	2
Kiona	2
Mildew Immune Mazzard #17	2 6
Mildew Immune Mazzard #23	2
Newstar	2 6
NY 54	2
PMR-1	2 5
Sato Nashiki	2 4
Schmidt	3 5
Selah	2 4
Tieton	2
Ulster	2
Vic	4 5
Windsor	4 6
23_1_47	2
23_2_46	2
23_3_24	2
23_3_28	2
23_3_40	2
23_5_17	2 3
23_8_24	2
23_8_45	2 3
4.10.19-001	2
4.10.19-002	2
4.10.19-003	2
4.10.19-004	2
4.10.19-005	2 5
4.10.19-006	2
4.10.19-008	2 6
4.10.19-009	2
4.10.19-010	2
4.10.19-011	2
4.10.2-001	2 6
4.10.2-002	2 6
4.10.2-004	2
4.10.2-005	2
4.10.2-006	2
4.10.2-008	2
4.10.2-009	2
4.10.2-010	2 6
4.10.5-001	2 6
4.10.5-002	2 6
4.10.5-003	2
4.10.5-004	2 6
4.10.5-005	2 6
4.10.5-006	2
4.10.5-015	6
4.10.5-016	2
4.10.5-018	2
4.10.5-019	2
4.10.5-020	2 6
4.10.5-028	2 6
4.10.5-029	2
4.10.5-030	2 4
4.16.2-001	2
4.18.15-001	2 5
4.18.15-002	5 6
4.18.15-003	2
4.18.15-004	2 5
4.18.15-005	2 6
4.18.15-006	2
4.18.15-007	2 4
4.18.15-009	5 6
4.18.15-011	5 6
4.18.15-012	2 5
4.18.15-013	2
4.18.15-014	2 5
4.18.15-015	2 6
4.18.15-016	5 6
4.18.15-028	2 6
4.18.15-030	5 6
4.18.15-039	2 5
4.18.15-040	2
4.18.15-043	5 6
4.18.2-005	2 6
4.18.2-007	2
4.18.2-008	2
4.18.2-010	2 6
4.18.2-015	2
4.18.2-016	2
4.18.2-018	2
4.18.2-019	2
4.18.2-020	2 6
4.18.2-024	2
4.18.2-027	2
4.18.2-028	2
5.12.5-005	2
5.12.5-007	2
5.12.5-008	2
5.12.5-009	2
5.12.5-010	2
5.12.5-011	2
5.12.5-019	2 4
5.12.5-020	2
5.12.5-021	2
5.12.5-022	2
5.14.15-003	4 5
5.14.15-004	2 4
5.14.15-005	2 4
5.14.15-006	2 6
5.14.15-007	2 4
5.14.15-013	2 6
5.14.15-014	5 6
5.14.15-015	4 5
5.14.15-016	5 6
5.14.15-017	5 6
5.14.15-018	5 6
5.14.15-019	5 6
5.14.15-020	2 6
5.14.23-003	2 6
5.14.23-004	2 6
5.14.23-006	2 6
5.23.15-001	2
5.23.15-002	2 5
5.23.2-001	2
5.23.2-002	2
5.23.2-003	2
5.28.15-001	2 3
5.28.15-002	2 3
5.28.15-003	2 3
5.28.15-004	3 5
5.28.15-005	2 3
5.28.15-006	2 5
5.28.15-007	2
5.28.15-008	3 5
5.28.15-009	3 5
5.28.15-010	2 3
5.28.15-011	2 5
5.28.15-012	2
5.28.15-013	2
5.28.37-001	2 3
5.28.37-002	2
5.28.37-003	2
5.28.37-004	2 3
5.28.37-005	2
5.28.37-008	2
5.28.37-009	2 3
5.28.37-010	2 3
5.28.37-011	2 3
5.28.37-012	5 6
5.4.15-004	4 5
5.4.15-005	2 4
6.14.2-006	2 6
6.14.2-007	2 6
6.14.2-008	2 6
6.14.2-009	6
6.14.2-010	2 4
6.14.2-011	2 4
6.14.2-012	2 6
6.14.2-013	3 6
6.14.2-015	2 6
6.29.49-001	4 6
6.29.49-002	4 6
6.29.49-003	2 4
6.29.49-005	4 6
6.29.49-007	4 6
6.29.49-008	2 5
6.30.49-009	4 6
6.30.49-011	4 6
6.30.49-012	2 5
6.30.49-013	5 6
6.30.49-014	2 4
6.30.49-015	4 6
6.30.49-016	4 6
6.30.49-017	4 6
6.31.49-003	4 6
6.31.49-004	2 4
6.31.49-005	2 4
6.31.49-006	4 6
6.31.49-007	2 4
6.31.49-009	2 6
6.31.49-010	4 6
6.31.49-011	4 6
6.31.49-012	2 4
6.31.49-013	4 6
6.31.49-014	4 6
6.31.49-015	2 4
6.32.49-032	4 6
6.32.49-033	4 6
6.32.49-034	5 6
6.32.49-035	4 6
6.32.49-037	2 5
6.32.49-038	2 4
6.32.49-039	2 5
6.32.49-040	2 5
6.32.49-041	4 6
6.33.49-001	2
6.33.49-002	2 6
6.33.49-003	2 4
6.33.49-004	2 4
23-01-11	2 3
23-02-34	2
23-03-13	2
23-03-23	2 3
23-03-48	2 3
23-03-56	2
23-06-04	2 3
23-06-23	2 3
23-07-26	2 3
23-08-55	2
Dzherlo	3 6
Olympus	2 5
PC 7146-16	2
Kordia	2
Cristobalina	6 7
Vittoria	2
FR20T047	2 3
FR13T004	2 4
FR13T071	2 6
FR31T121	2 6
FR32T087	5 6
FR32T088	5 6
FR32T093	2 6
FR20T045	3 5
FR26T117	2 4
FR29T115	2 5
PC 9816-005	5 6
PC 9816-023	2 4
PC 9816-041	2 6
PC 9816-059	2 4
PC 9816-083	5 6
PC 9816-103	5 6
PC 9816-105	2 6
PC 9816-106	2 4
PC 9816-112	4 5
PC 9816-078	2 6
PC 9819-005	2
PC 9819-031	2 5
PC 9819-038	2 6
PC 9814-025	2 4
PC 9814-078	2 4
PC 9814-103	4 5
PC 9814-105	2 4
PC 9814-026	4 5
PC 9814-028	4 5
PC 9814-055	4 5
PC 9814-062	4 5
PC 9814-063	2 4
PC 9814-068	4 5
PC 9814-071	2 4
PC 9814-076	4 5
PC 9819-034	2 4
PC 9816-042	6 8
Emperor Francis	2 3
Black Republican	2 4
Krupnoplodnaya	2 3
Early Burlat	2
Venus	2 6
Moreau	2
Index	2 4
Sunburst	2 6
6.14.6-008	2 6
FR02T062	2
FR02T063	2
5.14.23.001	2 4
6.16.44-005	2
6.23.44-001	2
6.23.44-002	2
6.23.55-006	2
6.23.55-010	2
6.23.6-002	2
6.23.6-003	2
6.16.44-001	2
6.16.44-002	2 4
6.16.44-003	4 5
6.28.44-001	3 5
6.28.44-002	2 3
6.4.44-003	2 4
6.4.44-004	2 4
6.4.44-006	4 5
6.4.44-007	4 5
6.4.44-009	2 4
6.4.44-010	4 5
6.4.45-001	2 4
4.3.1-004	2 4
4.3.1-009	2 4
5.3.1-008	2 4
5.3.1-010	2 4
5.3.1-015	2 4
5.3.1-016	2 4
5.3.1-017	2 4
6.30.50-002	4
6.14.6-003	2 6
6.28.45-001	2 3
FR09T089	2
6.12.45-001	2 7
6.12.45-002	2 7
6.12.45-003	2 7
6.12.45-004	2 6
6.12.45-005	2 7
6.12.45-007	2 7
6.12.45-008	2 7
6.12.45-009	2 7
6.12.45-010	2 7
6.14.45-001	6
6.14.45-003	6 7
6.14.45-004	4 7
6.14.45-005	4 7
6.14.45-006	4 7
6.14.45-007	4 7
6.14.45-008	4 7
6.14.45-009	6
6.28.45-002	3 6
6.14.6-001	3 6
6.14.6-002	3 6
6.14.6-004	3 6
6.14.6-005	3 6
6.14.6-006	3 6
6.14.6-007	3 6
6.14.6-010	4 6
6.23.6-004	2 3
6.23.6-005	2 3
6.23.6-007	2 6
6.23.6-008	2 3
6.23.6-012	2 3
6.28.44-005	2 6
6.28.55-006	3 6
6.28.55-007	3 6
6.23.6-001	2
6.23.6-006	2
6.23.6-009	2 7
6.4.44-001	3 4
6.4.6-001	2 6
FR04T029	2 4
FR08T074	2
6.28.55-002	2
FR01T050	2
5.10.25-001	3 6
5.10.25-002	2 6
5.16.25-002	3 4
5.16.25-003	2
5.16.25-004	2
5.16.25-005	2 4
5.16.25-009	3 4
5.16.25-010	3 4
5.16.25-013	2 3
5.18.25-005	2 3
4.3.1-008	2
5.3.1-005	2 6
FR09T037	4 6
6.29.50-001	2 4
6.29.50-002	2 5
6.29.50-003	2 5
6.29.50-004	2 5
6.29.50-005	2 4
6.29.50-007	2 4
6.29.50-008	2 5
6.30.50-004	2 5
6.30.50-005	2 4
6.31.50-001	2 4
6.31.50-002	2 4
6.31.50-003	2 4
6.31.50-004	2 4
6.31.50-005	2 4
6.32.50-001	2 5
6.32.50-002	2 5
6.32.50-003	2 4
6.32.50-004	2 4
6.32.50-005	2 4
6.32.50-006	2 5
6.32.50-007	2 5
6.32.50-008	2 4
6.33.50-001	2 4
5.10.26-001	2 6
5.10.26-002	2 6
5.10.26-003	2 6
5.10.26-004	2
5.10.26-005	2 6
5.10.26-007	2 6
5.10.26-008	2 6
5.13.26-001	2 5
5.13.26-002	2
5.13.26-003	2 5
5.13.26-004	2 5
5.13.26-005	2 5
5.13.26-006	2
5.13.26-007	2 5
5.13.26-009	2 5
5.14.26-001	2 6
5.14.26-002	2 4
5.14.26-003	2 4
5.16.26-001	2
5.16.26-002	2
5.16.26-003	2 4
5.16.40-001	2
5.18.26-001	2
5.18.26-002	2
FR06T097	2 5
FR07T026	2 5
6.28.44-003	3 6
AA	4 5
PC 9816-069	4 5
PC 9816-079	4 5
PC 9816-096	2 6
PC 9816-104	2 4
PC 9816-114	4 5
PC 9817-097	2 4
4.18.15-010	2 5
4.18.15-042	2 5
4.18.15-047	2 6
4.18.15-048	5 6
4.3.1-003	2
4.3.1-005	2
4.3.1-006	2 5
4.3.1-007	2 5
5.3.1-009	2 5
5.3.1-011	2 5
5.3.1-012	2
5.3.1-013	2 5
5.3.1-014	2
5.4.15-001	2 4
5.4.15-002	4 5
5.4.15-003	2 4
FR01T070	2 5
FR49T083	2
5.16.17-003	4
5.16.25-006	2 4
5.16.25-008	2 4
5.16.25-012	2 4
5.20.6-001	2 4
6.16.44-008	2 4
6.4.45-003	2 4
6.4.6-004	2 4
6.4.6-006	2 4
6.4.6-007	2 4
6.4.6-008	2 4
6.4.6-009	2 4
5.16.17-001	2 6
5.16.17-004	2
6.14.17-001	6
6.14.17-002	6
6.14.17-003	4 6
6.14.17-004	2 4
6.14.17-005	2 6
FR02T024	2
4.14.17-001	2 6
5.13.26-008	2 5
6.28.44-004	2 3
4.3.1-001	2 6
5.3.1-007	2
5.3.1-018	2
5.10.40-001	6
5.10.40-002	2 6
5.10.40-003	2
5.10.40-004	2 6
5.10.40-005	2 6
5.10.40-007	2
5.10.40-008	2
5.10.40-009	2 6
5.10.40-010	2 6
5.10.40-011	6
5.10.40-012	2 6
5.10.40-013	2
5.10.40-014	6
5.10.40-015	2
5.10.40-016	2 6
5.10.40-017	2 6
5.13.40-002	2 6
5.13.40-003	2 5
5.13.40-004	2 6
5.16.40-003	2 4
5.16.40-004	2 4
6.30.50-001	2 5
6.30.50-003	2 5
6.10.55-001	2
6.10.55-002	2
6.10.55-003	2
6.10.55-004	2 6
6.10.55-005	2 6
6.10.55-006	2 6
6.10.55-007	2 6
6.10.55-008	2 6
6.10.55-009	2
6.10.55-010	2 6
6.16.55-001	2 4
6.16.55-002	2 4
6.23.17-001	2
6.23.55-002	2
6.23.55-005	2
6.23.55-007	2
6.23.55-008	2
6.28.55-001	2
6.28.55-003	2
6.28.55-004	2
6.28.55-005	2 3
5.13.40-001	2 3
5.16.25-001	2
5.18.25-004	2 6
5.3.1-006	2 4
6.16.44-004	4 6
6.16.44-006	4 5
6.16.44-007	2
6.16.44-009	4 5
6.23.17-003	2
6.23.17-004	2
Bertiolle	2 5
Napoleon	2 4

Map Positions


Haplotype Block	Map Name	Linkage Group	Start	Stop
Pav-HB-08-1	Sweet Cherry-RosBREED-1.6K-2019	8	0	1.55

Projects


Project Name
RosBREED_Sweet_Cherry_CRS_Haplotype_2020

Haplotypes

Marker	2	3	4	5	6	7	8	9	10
RosBREED_snp_sweet_cherry_Pp8_00079992	A	B	B	A	B	B	B	-	B
RosBREED_snp_sweet_cherry_Pp8_00150929	B	B	A	A	A	B	B	-	A
RosBREED_snp_sweet_cherry_Pp8_00175575	B	A	B	B	B	B	A	B	B
RosBREED_snp_sweet_cherry_Pp8_00233014	A	B	B	B	B	A	B	-	B
RosCOS3030-170_snp_sweet_cherry_Pp8_00241070	B	A	B	A	A	B	B	-	-

Alignments

Feature Name	Type	Location	Analysis
Pp08	chromosome	Pp08:79992..240989.	Prunus persica Whole Genome Assembly v2.0 & Annotation v2.1 (v2.0.a1)