Pav-HB-07-12

Haplotype Block Overview

Name	Pav-HB-07-12
Species	Prunus avium
Stock Haplotype	[view all 517]
Haplotype	[view all]

Publications


Year	Publication
2019	Vanderzande S, Howard NP, Cai L, Da Silva Linge C, Antanaviciute L, Bink MCAM, Kruisselbrink JW, Bassil N, Gasic K, Iezzoni A, Van de Weg E, Peace C. High-quality, genome-wide SNP genotypic data for pedigreed germplasm of the diploid outbreeding species apple, peach, and sweet cherry through a common workflow. PloS one. 2019; 14(6):e0210928.

Stock Haplotype

Name	Haplotype
Summit	2 8
Lambert	2 4
Regina	2 9
Ambrunes	5 6
Lapins	2 8
Stella	2 4
Sweetheart	5 8
Van	5 8
Schneiders	2 6
Bing	4 8
Rainier	5 8
5.18.25-001	5 9
5.3.1-001	4 8
5.3.1-002	2 8
Benton	2 4
Brooks	2 8
Cashmere	2 4
Chelan	2 4
Chinook	4 8
Cowiche	2 4
Gil Peck	4 8
Glacier	4
Kiona	2 4
Mildew Immune Mazzard #17	6
Mildew Immune Mazzard #23	4 6
Newstar	2 8
NY 54	9
PMR-1	2 4
Sato Nashiki	2 6
Schmidt	2 3
Selah	2 8
Tieton	2
Ulster	4 8
Vic	3 8
Windsor	5 8
23_1_47	3 9
23_2_46	3 9
23_3_24	2 9
23_3_28	3 9
23_3_40	2 9
23_5_17	2 9
23_8_24	3 9
23_8_45	3 9
4.10.19-001	2 8
4.10.19-002	2
4.10.19-003	2 8
4.10.19-004	2 8
4.10.19-005	2 9
4.10.19-006	2
4.10.19-008	2
4.10.19-009	2
4.10.19-010	2
4.10.19-011	2
4.10.2-001	5 8
4.10.2-002	6 8
4.10.2-004	6 8
4.10.2-005	2 6
4.10.2-006	2 6
4.10.2-008	8
4.10.2-009	6 8
4.10.2-010	2 5
4.10.5-001	2
4.10.5-002	2
4.10.5-003	2
4.10.5-004	2 8
4.10.5-005	2 4
4.10.5-006	2 4
4.10.5-015	2
4.10.5-016	2 4
4.10.5-018	2 4
4.10.5-019	2 4
4.10.5-020	2
4.10.5-028	2
4.10.5-029	2
4.10.5-030	2 8
4.16.2-001	5 8
4.18.15-001	2 9
4.18.15-002	2
4.18.15-003	2 9
4.18.15-004	2
4.18.15-005	8 9
4.18.15-006	8 9
4.18.15-007	8
4.18.15-009	2
4.18.15-011	8 9
4.18.15-012	2 9
4.18.15-013	8 9
4.18.15-014	8 9
4.18.15-015	2 9
4.18.15-016	8 9
4.18.15-028	2 9
4.18.15-030	2 9
4.18.15-039	8 9
4.18.15-040	2
4.18.15-043	8 9
4.18.2-005	6 8
4.18.2-007	2 6
4.18.2-008	2 5
4.18.2-010	2 6
4.18.2-015	5 8
4.18.2-016	6 8
4.18.2-018	2 5
4.18.2-019	6 8
4.18.2-020	5 8
4.18.2-024	6 8
4.18.2-027	2 6
4.18.2-028	6 8
5.12.5-005	2 4
5.12.5-007	2 4
5.12.5-008	4
5.12.5-009	4
5.12.5-010	2 4
5.12.5-011	2 4
5.12.5-019	2 4
5.12.5-020	2
5.12.5-021	2 4
5.12.5-022	4
5.14.15-003	5 9
5.14.15-004	2 8
5.14.15-005	5 9
5.14.15-006	2 5
5.14.15-007	2 5
5.14.15-013	5 9
5.14.15-014	8 9
5.14.15-015	5 9
5.14.15-016	5 9
5.14.15-017	8 9
5.14.15-018	5 9
5.14.15-019	2 5
5.14.15-020	8 9
5.14.23-003	4 8
5.14.23-004	2 5
5.14.23-006	2 8
5.23.15-001	4
5.23.15-002	2
5.23.2-001	4 6
5.23.2-002	2 6
5.23.2-003	4 6
5.28.15-001	2 9
5.28.15-002	2 9
5.28.15-003	4 9
5.28.15-004	2
5.28.15-005	2
5.28.15-006	2 9
5.28.15-007	4 9
5.28.15-008	4 9
5.28.15-009	2 9
5.28.15-010	2 9
5.28.15-012	2
5.28.15-013	2 4
5.28.37-001	2 8
5.28.37-002	2 8
5.28.37-003	2
5.28.37-004	4 8
5.28.37-005	2
5.28.37-008	2 8
5.28.37-009	2 4
5.28.37-010	2 4
5.28.37-011	4 8
5.28.37-012	2
5.4.15-004	8 9
5.4.15-005	8 9
6.14.2-006	6 8
6.14.2-007	5
6.14.2-008	5 8
6.14.2-009	6 8
6.14.2-010	5 6
6.14.2-011	6 8
6.14.2-012	5
6.14.2-013	2 5
6.14.2-015	6 8
6.29.49-001	6 8
6.29.49-002	6 8
6.29.49-003	6 8
6.29.49-005	6 8
6.29.49-007	4 6
6.29.49-008	4 6
6.30.49-009	6 8
6.30.49-011	2 6
6.30.49-012	2 6
6.30.49-013	6 8
6.30.49-014	2 6
6.30.49-015	2 6
6.30.49-016	2 6
6.30.49-017	2 6
6.31.49-003	6 8
6.31.49-004	6 8
6.31.49-005	2 6
6.31.49-006	6 8
6.31.49-007	2 6
6.31.49-009	6 8
6.31.49-010	6 8
6.31.49-011	6 8
6.31.49-012	2 6
6.31.49-013	2 6
6.31.49-014	6 8
6.31.49-015	2 6
6.32.49-032	6 8
6.32.49-033	4 6
6.32.49-034	4 6
6.32.49-035	4 6
6.32.49-037	6 8
6.32.49-038	6 8
6.32.49-039	6 8
6.32.49-040	6 8
6.32.49-041	6 8
6.33.49-001	2 6
6.33.49-002	2 6
6.33.49-003	6 8
6.33.49-004	6 8
23-01-11	2 9
23-02-34	2 9
23-03-13	3 9
23-03-23	2 9
23-03-48	2 9
23-03-56	2 9
23-06-04	3 9
23-06-23	2 9
23-07-26	3 9
23-08-55	3 9
Dzherlo	2 6
Olympus	4 8
PC 7146-16	2
Kordia	2 4
Cristobalina	6
Vittoria	2 6
FR20T047	4
FR13T004	8
FR13T071	2 8
FR31T121	6 8
FR32T087	5 7
FR32T088	5 7
FR32T093	4 5
FR20T045	4 9
FR26T117	2 8
FR29T115	6 8
PC 9816-005	8
PC 9816-023	2 5
PC 9816-041	4 8
PC 9816-059	4 8
PC 9816-083	2 8
PC 9816-103	2 5
PC 9816-105	4 5
PC 9816-106	2 5
PC 9816-112	2 5
PC 9816-078	2 5
PC 9819-005	4 5
PC 9819-031	2 8
PC 9819-038	4 8
PC 9814-025	2 8
PC 9814-078	2 8
PC 9814-103	2 8
PC 9814-105	4 8
PC 9814-026	2 8
PC 9814-028	2 8
PC 9814-055	2 8
PC 9814-062	4 8
PC 9814-063	2 8
PC 9814-068	4 8
PC 9814-071	2 8
PC 9814-076	4 8
PC 9819-034	4 8
PC 9816-042	2 8
Emperor Francis	2 3
Black Republican	4 8
Krupnoplodnaya	10 9
Early Burlat	2 4
Venus	4 8
Moreau	2 4
Index	2 8
Sunburst	2 4
6.14.6-008	5 6
FR02T062	6 8
FR02T063	6 8
5.14.23.001	4 5
6.16.44-005	2 8
6.23.44-001	2
6.23.44-002	2
6.23.55-006	2 4
6.23.55-010	2 4
6.23.6-002	2
6.23.6-003	4
6.16.44-001	4 8
6.16.44-002	2 7
6.16.44-003	7 8
6.28.44-001	2 4
6.28.44-002	4 7
6.4.44-003	4 8
6.4.44-004	7 8
6.4.44-006	4
6.4.44-007	4
6.4.44-009	4 8
6.4.44-010	7 8
6.4.45-001	4 7
4.3.1-004	4
4.3.1-009	2 4
5.3.1-008	2 4
5.3.1-010	4 8
5.3.1-015	4 8
5.3.1-016	2 4
5.3.1-017	2 8
6.30.50-002	4 8
6.14.6-003	2 8
6.28.45-001	2 4
FR09T089	2 4
6.12.45-001	4 6
6.12.45-002	2 6
6.12.45-003	2 6
6.12.45-004	2 6
6.12.45-005	2 6
6.12.45-007	4 6
6.12.45-008	2 6
6.12.45-009	4 6
6.12.45-010	2 6
6.14.45-001	5 6
6.14.45-003	5 6
6.14.45-004	6 8
6.14.45-005	6 8
6.14.45-006	6 8
6.14.45-007	5 6
6.14.45-008	5 6
6.14.45-009	6 8
6.28.45-002	4 6
6.14.6-001	2 5
6.14.6-002	5 6
6.14.6-004	5 6
6.14.6-005	2 8
6.14.6-006	6 8
6.14.6-007	6 8
6.14.6-010	2 8
6.23.6-004	2
6.23.6-005	2
6.23.6-007	2 4
6.23.6-008	2 4
6.23.6-012	2
6.28.44-005	2 4
6.28.55-006	4 5
6.28.55-007	2
6.23.6-001	14 4
6.23.6-006	2 3
6.23.6-009	4 8
6.4.44-001	6 8
6.4.6-001	2 4
FR04T029	2 8
FR08T074	5 8
6.28.55-002	4 8
FR01T050	4 8
5.10.25-001	2 9
5.10.25-002	8 9
5.16.25-002	2 9
5.16.25-003	2
5.16.25-004	2
5.16.25-005	10 2
5.16.25-009	10 2
5.16.25-010	10 8
5.16.25-013	2 9
5.18.25-005	5 9
4.3.1-008	2 4
5.3.1-005	4 8
FR09T037	2 8
6.29.50-001	6 8
6.29.50-002	4 6
6.29.50-003	4 6
6.29.50-004	4 8
6.29.50-005	4
6.29.50-007	4 6
6.29.50-008	4 8
6.30.50-004	2 6
6.30.50-005	2 4
6.31.50-001	2 6
6.31.50-002	6
6.31.50-003	6
6.31.50-004	4 8
6.31.50-005	2 6
6.32.50-001	4 6
6.32.50-002	6 8
6.32.50-003	4 8
6.32.50-004	4 8
6.32.50-005	4 8
6.32.50-006	6 8
6.32.50-007	6 8
6.32.50-008	4
6.33.50-001	2 4
5.10.26-001	4 8
5.10.26-002	2
5.10.26-003	2 4
5.10.26-004	2 8
5.10.26-005	2 4
5.10.26-007	2
5.10.26-008	2 4
5.13.26-001	2
5.13.26-002	2 4
5.13.26-003	2 4
5.13.26-004	2 4
5.13.26-005	2 4
5.13.26-006	2 4
5.13.26-007	2
5.13.26-009	2
5.14.26-001	2 5
5.14.26-002	2 5
5.14.26-003	4 8
5.16.26-001	2 4
5.16.26-002	2
5.16.26-003	2 8
5.16.40-001	2 8
5.18.26-001	2 8
5.18.26-002	4 8
FR06T097	2 5
FR07T026	2 5
6.28.44-003	2 5
AA	4 5
PC 9816-069	4 8
PC 9816-079	2 8
PC 9816-096	2 5
PC 9816-104	2 8
PC 9816-114	4 8
PC 9817-097	2 8
4.18.15-010	2 9
4.18.15-042	2 8
4.18.15-047	2 9
4.18.15-048	2 8
4.3.1-003	4 9
4.3.1-005	2 4
4.3.1-006	2 4
4.3.1-007	4 9
5.3.1-009	2 9
5.3.1-011	2 4
5.3.1-012	2 4
5.3.1-013	2 4
5.3.1-014	4 9
5.4.15-001	4 9
5.4.15-002	2 8
5.4.15-003	4 9
FR01T070	2 8
FR49T083	2 8
5.16.17-003	8
5.16.25-006	8
5.16.25-008	8
5.16.25-012	2 8
5.20.6-001	2 8
6.16.44-008	2
6.4.45-003	4 8
6.4.6-004	8
6.4.6-006	8
6.4.6-007	8
6.4.6-008	4 8
6.4.6-009	2 4
5.16.17-001	2 4
5.16.17-004	2 4
6.14.17-001	2 5
6.14.17-002	2 8
6.14.17-003	2 5
6.14.17-004	4 5
6.14.17-005	4 8
FR02T024	4 8
4.14.17-001	8
5.13.26-008	2
6.28.44-004	2 4
4.3.1-001	4 8
5.3.1-007	4 8
5.3.1-018	4 8
5.10.40-001	2 4
5.10.40-002	4 8
5.10.40-003	2 4
5.10.40-004	2 8
5.10.40-005	8
5.10.40-007	8
5.10.40-008	2 8
5.10.40-009	2 8
5.10.40-010	4 8
5.10.40-011	4 8
5.10.40-012	8
5.10.40-013	2 8
5.10.40-014	8
5.10.40-015	4 8
5.10.40-016	2 8
5.10.40-017	4 8
5.13.40-002	4 8
5.13.40-003	4 8
5.13.40-004	4 8
5.16.40-003	2 8
5.16.40-004	2 4
6.30.50-001	8
6.30.50-003	8
6.10.55-001	2 8
6.10.55-002	2 8
6.10.55-003	2
6.10.55-004	2 8
6.10.55-005	2
6.10.55-006	6 8
6.10.55-007	2 8
6.10.55-008	2 8
6.10.55-009	2
6.10.55-010	2 8
6.16.55-001	2
6.16.55-002	2 6
6.23.17-001	2 4
6.23.55-002	2 4
6.23.55-005	2 4
6.23.55-007	2 6
6.23.55-008	4 6
6.28.55-001	2 4
6.28.55-003	2
6.28.55-004	2 4
6.28.55-005	2 4
5.13.40-001	3 4
5.16.25-001	2 8
5.18.25-004	2 8
5.3.1-006	10 4
6.16.44-004	2
6.16.44-006	2 7
6.16.44-007	2 3
6.16.44-009	4 8
6.23.17-003	2 4
6.23.17-004	2
Bertiolle	4 7
Napoleon	2 4

Map Positions


Haplotype Block	Map Name	Linkage Group	Start	Stop
Pav-HB-07-12	Sweet Cherry-RosBREED-1.6K-2019	7	52.33	67.33

Projects


Project Name
RosBREED_Sweet_Cherry_CRS_Haplotype_2020

Haplotypes

Marker	2	3	4	5	6	7	8	9	10	11	12	13	14
RosBREED_snp_sweet_cherry_Pp7_16709587	B	B	B	B	A	B	B	A	A	B	B	-	B
RosBREED_snp_sweet_cherry_Pp7_16890828	A	B	B	A	B	A	B	A	B	-	-	-	A
RosBREED_snp_sweet_cherry_Pp7_17033564	A	B	A	A	A	B	B	A	A	B	A	A	B
RosBREED_snp_sweet_cherry_Pp7_17249681	A	B	A	A	A	A	A	A	B	A	A	A	A
RosBREED_snp_tart_cherry_a_Pp7_17088853	B	A	B	A	B	B	A	B	B	A	B	B	A
RosCOS1241-314_snp_sweet_cherry_Pp7_16938107	B	A	B	B	B	B	B	B	B	B	B	B	B

Alignments

Feature Name	Type	Location	Analysis
Pp07	chromosome	Pp07:18486995..21191363.	Prunus persica Whole Genome Assembly v2.0 & Annotation v2.1 (v2.0.a1)