Pav-HB-06-8

Haplotype Block Overview

Name	Pav-HB-06-8
Species	Prunus avium
Stock Haplotype	[view all 518]
Haplotype	[view all]

Publications


Year	Publication
2019	Vanderzande S, Howard NP, Cai L, Da Silva Linge C, Antanaviciute L, Bink MCAM, Kruisselbrink JW, Bassil N, Gasic K, Iezzoni A, Van de Weg E, Peace C. High-quality, genome-wide SNP genotypic data for pedigreed germplasm of the diploid outbreeding species apple, peach, and sweet cherry through a common workflow. PloS one. 2019; 14(6):e0210928.

Stock Haplotype

Name	Haplotype
Summit	2 5
Lambert	2 7
Regina	11 2
Ambrunes	6 9
Lapins	2 5
Stella	2 7
Sweetheart	3 5
Van	3 5
Schneiders	11 2
Bing	12 7
Rainier	5 7
5.18.25-001	2 3
5.3.1-001	16 3
5.3.1-002	16 3
Benton	5 7
Brooks	11 5
Cashmere	11 7
Chelan	2 5
Chinook	12 7
Cowiche	5 6
Gil Peck	12 7
Glacier	2 8
Kiona	2 7
Mildew Immune Mazzard #17	5 8
Mildew Immune Mazzard #23	5 8
Newstar	2 5
NY 54	6 8
PMR-1	2 8
Sato Nashiki	6 7
Schmidt	2 3
Selah	2 7
Tieton	11 2
Ulster	12 7
Vic	3 7
Windsor	6
23_1_47	3 8
23_2_46	3 8
23_3_24	3 6
23_3_28	3 8
23_3_40	3 8
23_5_17	2 6
23_8_24	3 6
23_8_45	3 8
4.10.19-001	2 5
4.10.19-002	11 2
4.10.19-003	11 2
4.10.19-004	11 2
4.10.19-005	2
4.10.19-006	11 2
4.10.19-008	2 5
4.10.19-009	11 2
4.10.19-010	11 5
4.10.19-011	2 5
4.10.2-001	5 6
4.10.2-002	2 6
4.10.2-004	2 6
4.10.2-005	2 6
4.10.2-006	2 9
4.10.2-008	2 5
4.10.2-009	5 6
4.10.2-010	5 6
4.10.5-001	5
4.10.5-002	2 5
4.10.5-003	2
4.10.5-004	5
4.10.5-005	2 5
4.10.5-006	2
4.10.5-015	2 5
4.10.5-016	2 5
4.10.5-018	5
4.10.5-019	5
4.10.5-020	2 5
4.10.5-028	5
4.10.5-029	2 5
4.10.5-030	12 5
4.16.2-001	2 6
4.18.15-001	11 5
4.18.15-002	2 5
4.18.15-003	11 5
4.18.15-004	2 5
4.18.15-005	11 5
4.18.15-006	2 5
4.18.15-007	5 7
4.18.15-009	11 2
4.18.15-011	11 5
4.18.15-012	2 5
4.18.15-013	11 5
4.18.15-014	2 5
4.18.15-015	2
4.18.15-016	11 2
4.18.15-028	11 5
4.18.15-030	2 5
4.18.15-039	2 5
4.18.15-040	2
4.18.15-043	11 5
4.18.2-005	5 6
4.18.2-007	2 6
4.18.2-008	5 6
4.18.2-010	5 6
4.18.2-015	2 6
4.18.2-016	5 9
4.18.2-018	2 6
4.18.2-019	5 6
4.18.2-020	5 9
4.18.2-024	2 9
4.18.2-027	2 9
4.18.2-028	5 6
5.12.5-005	2 5
5.12.5-007	2 5
5.12.5-008	2 5
5.12.5-009	5 7
5.12.5-010	2
5.12.5-011	2 7
5.12.5-019	2 7
5.12.5-020	5 7
5.12.5-021	2 5
5.12.5-022	2 7
5.14.15-003	2 5
5.14.15-004	11 5
5.14.15-005	11 7
5.14.15-006	11 7
5.14.15-007	2 5
5.14.15-013	2 5
5.14.15-014	2 5
5.14.15-015	11 7
5.14.15-016	2 7
5.14.15-017	2 7
5.14.15-018	2 5
5.14.15-019	2 5
5.14.15-020	11 5
5.14.23-003	5
5.14.23-004	5 7
5.14.23-006	5 7
5.23.15-001	5
5.23.15-002	2 7
5.23.2-001	6 7
5.23.2-002	5 6
5.23.2-003	5 9
5.28.15-001	11 6
5.28.15-002	11 5
5.28.15-003	11 6
5.28.15-004	2 5
5.28.15-005	2 5
5.28.15-006	11 5
5.28.15-007	6
5.28.15-008	2 6
5.28.15-009	11 5
5.28.15-010	2 6
5.28.15-011	11 5
5.28.15-012	2 5
5.28.15-013	11 6
5.28.37-001	2 5
5.28.37-002	2 5
5.28.37-003	2 6
5.28.37-004	2 6
5.28.37-005	5 6
5.28.37-008	5 6
5.28.37-009	5
5.28.37-010	2 6
5.28.37-011	5
5.28.37-012	2
5.4.15-004	12 2
5.4.15-005	2 7
6.14.2-006	5 9
6.14.2-007	5 9
6.14.2-008	6 7
6.14.2-009	2 7
6.14.2-010	6 7
6.14.2-011	7 9
6.14.2-012	7 9
6.14.2-013	2 5
6.14.2-015	5 6
6.29.49-001	5 8
6.29.49-002	8
6.29.49-003	8
6.29.49-005	8
6.29.49-007	7 8
6.29.49-008	5 8
6.30.49-009	2 5
6.30.49-011	2 8
6.30.49-012	5 7
6.30.49-013	2 5
6.30.49-014	7 8
6.30.49-015	2 8
6.30.49-016	5 7
6.30.49-017	2 8
6.31.49-003	5
6.31.49-004	5
6.31.49-005	5 8
6.31.49-006	5 8
6.31.49-007	5 8
6.31.49-009	5
6.31.49-010	5 8
6.31.49-011	5 8
6.31.49-012	5 8
6.31.49-013	8
6.31.49-014	5
6.31.49-015	5
6.32.49-032	8
6.32.49-033	5 8
6.32.49-034	5 8
6.32.49-035	5 8
6.32.49-037	5
6.32.49-038	5 7
6.32.49-039	5 8
6.32.49-040	5 8
6.32.49-041	5 7
6.33.49-001	2 8
6.33.49-002	2 8
6.33.49-003	2 5
6.33.49-004	5
23-01-11	2 6
23-02-34	3 8
23-03-13	3 6
23-03-23	2 6
23-03-48	3 6
23-03-56	2 6
23-06-04	2 6
23-06-23	3 6
23-07-26	3 6
23-08-55	2 6
Dzherlo	2
Olympus	2 5
PC 7146-16	7 8
Kordia	11 16
Cristobalina	2 9
Vittoria	9
FR20T047	5
FR13T004	5 7
FR13T071	7 8
FR31T121	5 9
FR32T087	11 7
FR32T088	10 7
FR32T093	11 7
FR20T045	11 5
FR26T117	5 7
FR29T115	5 8
PC 9816-005	2 5
PC 9816-023	5 8
PC 9816-041	7 8
PC 9816-059	5 8
PC 9816-083	5 8
PC 9816-103	5 8
PC 9816-105	7 8
PC 9816-106	7 8
PC 9816-112	2 7
PC 9816-078	5 8
PC 9819-005	5 8
PC 9819-031	5 8
PC 9819-038	5 8
PC 9814-025	2 7
PC 9814-078	12 8
PC 9814-103	7 8
PC 9814-105	2 7
PC 9814-026	12 8
PC 9814-028	12 8
PC 9814-055	12 8
PC 9814-062	12 8
PC 9814-063	12 2
PC 9814-068	12 2
PC 9814-071	2 7
PC 9814-076	2 7
PC 9819-034	7 8
PC 9816-042	12 7
Emperor Francis	2 3
Black Republican	12 5
Krupnoplodnaya	2 8
Early Burlat	11 8
Venus	12 6
Moreau	5 8
Index	7
Sunburst	2
6.14.6-008	5 6
FR02T062	5 9
FR02T063	5 9
5.14.23.001	5
6.16.44-005	5 7
6.23.44-001	5 7
6.23.44-002	5 7
6.23.55-006	5 7
6.23.55-010	5 7
6.23.6-002	5
6.23.6-003	5 7
6.16.44-001	11 7
6.16.44-002	10 7
6.16.44-003	10 7
6.28.44-001	10 5
6.28.44-002	11 6
6.4.44-003	10 12
6.4.44-004	11 12
6.4.44-006	10 7
6.4.44-007	10 7
6.4.44-009	10 7
6.4.44-010	10 12
6.4.45-001	11 7
4.3.1-004	11 7
4.3.1-009	11 12
5.3.1-008	11 12
5.3.1-010	16 7
5.3.1-015	11 7
5.3.1-016	12 16
5.3.1-017	16 7
6.30.50-002	12 7
6.14.6-003	5 7
6.28.45-001	5
FR09T089	5 7
6.12.45-001	7 9
6.12.45-002	2 9
6.12.45-003	7 9
6.12.45-004	2 9
6.12.45-005	7 9
6.12.45-007	2
6.12.45-008	2
6.12.45-009	2 7
6.12.45-010	2 7
6.14.45-001	5 9
6.14.45-003	2 7
6.14.45-004	2 7
6.14.45-005	7 9
6.14.45-006	7 9
6.14.45-007	2 5
6.14.45-008	2 7
6.14.45-009	2 5
6.28.45-002	5 9
6.14.6-001	2 7
6.14.6-002	2 5
6.14.6-004	2 7
6.14.6-005	2 7
6.14.6-006	2 7
6.14.6-007	2 7
6.14.6-010	2 7
6.23.6-004	2 7
6.23.6-005	2 5
6.23.6-007	2 7
6.23.6-008	2 7
6.23.6-012	2 5
6.28.44-005	5 6
6.28.55-006	5 8
6.28.55-007	5
6.23.6-001	5 8
6.23.6-006	3 7
6.23.6-009	2 5
6.4.44-001	12 9
6.4.6-001	7 8
FR04T029	2
FR08T074	5 7
6.28.55-002	5 7
FR01T050	16 5
5.10.25-001	5 8
5.10.25-002	2 8
5.16.25-002	2 7
5.16.25-003	2
5.16.25-004	2
5.16.25-005	2
5.16.25-009	7 8
5.16.25-010	2 8
5.16.25-013	2 8
5.18.25-005	5 8
4.3.1-008	16 5
5.3.1-005	11 5
FR09T037	2 5
6.29.50-001	7 8
6.29.50-002	8
6.29.50-003	7 8
6.29.50-004	5 7
6.29.50-005	5 8
6.29.50-007	5 7
6.29.50-008	5 7
6.30.50-004	2 8
6.30.50-005	5 7
6.31.50-001	8
6.31.50-002	5 8
6.31.50-003	5 8
6.31.50-004	5 8
6.31.50-005	5
6.32.50-001	5 7
6.32.50-002	8
6.32.50-003	8
6.32.50-004	8
6.32.50-005	7 8
6.32.50-006	7 8
6.32.50-007	5 8
6.32.50-008	8
6.33.50-001	2 5
5.10.26-001	5
5.10.26-002	5
5.10.26-003	2 5
5.10.26-004	5 8
5.10.26-005	2 5
5.10.26-007	5
5.10.26-008	5 8
5.13.26-001	5 8
5.13.26-002	2 8
5.13.26-003	8
5.13.26-004	5 8
5.13.26-005	8
5.13.26-006	8
5.13.26-007	5 8
5.13.26-009	5 8
5.14.26-001	5 7
5.14.26-002	5
5.14.26-003	5
5.16.26-001	2 8
5.16.26-002	7 8
5.16.26-003	2 8
5.16.40-001	5 7
5.18.26-001	3 8
5.18.26-002	5
FR06T097	2 5
FR07T026	5 7
6.28.44-003	5 7
AA	7 8
PC 9816-069	7 8
PC 9816-079	2 7
PC 9816-096	2 5
PC 9816-104	5 8
PC 9816-114	7 8
PC 9817-097	2 5
4.18.15-010	2
4.18.15-042	2
4.18.15-047	2 5
4.18.15-048	11 5
4.3.1-003	11 16
4.3.1-005	11
4.3.1-006	11 16
4.3.1-007	11 16
5.3.1-009	16 2
5.3.1-011	16 2
5.3.1-012	11
5.3.1-013	11 2
5.3.1-014	11 2
5.4.15-001	2 7
5.4.15-002	11
5.4.15-003	11 12
FR01T070	2
FR49T083	2 5
5.16.17-003	2
5.16.25-006	2 7
5.16.25-008	2 7
5.16.25-012	2
5.20.6-001	5 7
6.16.44-008	2
6.4.45-003	12 2
6.4.6-004	2
6.4.6-006	2 7
6.4.6-007	2
6.4.6-008	2 7
6.4.6-009	5 7
5.16.17-001	2
5.16.17-004	2 7
6.14.17-001	2 5
6.14.17-002	2 5
6.14.17-003	2 7
6.14.17-004	2 7
6.14.17-005	2 5
FR02T024	2
4.14.17-001	5
5.13.26-008	2
6.28.44-004	2 6
4.3.1-001	16 5
5.3.1-007	16 5
5.3.1-018	11 5
5.10.40-001	5 6
5.10.40-002	12 2
5.10.40-003	12 5
5.10.40-004	5 6
5.10.40-005	5
5.10.40-007	12 2
5.10.40-008	2 6
5.10.40-009	5 6
5.10.40-010	12 5
5.10.40-011	2 6
5.10.40-012	2 6
5.10.40-013	12 2
5.10.40-014	12 2
5.10.40-015	12 2
5.10.40-016	5 6
5.10.40-017	12 2
5.13.40-002	2 6
5.13.40-003	2 6
5.13.40-004	12 8
5.16.40-003	12 7
5.16.40-004	6 7
6.30.50-001	2 6
6.30.50-003	6 7
6.10.55-001	5 9
6.10.55-002	2 9
6.10.55-003	2 9
6.10.55-004	5 9
6.10.55-005	2 9
6.10.55-006	5 9
6.10.55-007	5 9
6.10.55-008	5 9
6.10.55-009	5 9
6.10.55-010	5 9
6.16.55-001	7 9
6.16.55-002	2 9
6.23.17-001	5 9
6.23.55-002	5 9
6.23.55-005	7 9
6.23.55-007	5 9
6.23.55-008	5 9
6.28.55-001	6 9
6.28.55-003	6 9
6.28.55-004	5 9
6.28.55-005	6 9
5.13.40-001	2 6
5.16.25-001	2 5
5.18.25-004	5
5.3.1-006	2
6.16.44-004	2 8
6.16.44-006	10 2
6.16.44-007	3 7
6.16.44-009	2
6.23.17-003	7
6.23.17-004	3 5
Bertiolle	10 11
Napoleon	12 7

Map Positions


Haplotype Block	Map Name	Linkage Group	Start	Stop
Pav-HB-06-8	Sweet Cherry-RosBREED-1.6K-2019	6	21.14	23.82

Projects


Project Name
RosBREED_Sweet_Cherry_CRS_Haplotype_2020

Haplotypes

Marker	2	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20
RosBREED_snp_sweet_cherry_Pp6_06245490	B	B	A	A	B	A	B	B	B	B	A	A	A	B	A	B	-	-	-
RosBREED_snp_sweet_cherry_Pp6_06843830	B	B	A	B	A	A	A	B	A	A	B	B	A	B	A	A	-	A	A
RosBREED_snp_sweet_cherry_Pp6_06954315	B	B	A	B	B	B	B	B	B	B	A	-	-	A	B	-	B	B	B
RosCOS0474-507_snp_sweet_cherry_Pp6_07046277	A	A	B	A	B	B	A	B	B	A	A	A	B	A	A	B	-	A	B
RosCOS2092-129_snp_sweet_cherry_Pp6_07023241	A	B	A	A	A	A	A	B	B	B	A	A	A	A	A	A	-	A	A
RosCOS2092-343_snp_sweet_cherry_Pp6_07023454	A	B	A	A	A	A	A	B	B	B	A	A	A	A	A	A	-	A	A

Alignments

Feature Name	Type	Location	Analysis
Pp06	chromosome	Pp06:6260019..7060809.	Prunus persica Whole Genome Assembly v2.0 & Annotation v2.1 (v2.0.a1)