Pav-HB-06-4

Haplotype Block Overview

Name	Pav-HB-06-4
Species	Prunus avium
Stock Haplotype	[view all 517]
Haplotype	[view all]

Publications


Year	Publication
2019	Vanderzande S, Howard NP, Cai L, Da Silva Linge C, Antanaviciute L, Bink MCAM, Kruisselbrink JW, Bassil N, Gasic K, Iezzoni A, Van de Weg E, Peace C. High-quality, genome-wide SNP genotypic data for pedigreed germplasm of the diploid outbreeding species apple, peach, and sweet cherry through a common workflow. PloS one. 2019; 14(6):e0210928.

Stock Haplotype

Name	Haplotype
Summit	2 5
Lambert	2
Regina	3
Ambrunes	5 6
Lapins	2 3
Stella	2
Sweetheart	3 5
Van	3 5
Schneiders	2 3
Bing	2 4
Rainier	3 4
5.18.25-001	2 5
5.3.1-001	3 6
5.3.1-002	3 5
Benton	2 3
Brooks	4 5
Cashmere	2
Chelan	2 3
Chinook	2
Cowiche	3 5
Gil Peck	2 4
Glacier	2
Kiona	2
Mildew Immune Mazzard #17	2 3
Mildew Immune Mazzard #23	3
Newstar	2 3
NY 54	3
PMR-1	2
Sato Nashiki	2 3
Schmidt	2 5
Selah	2 4
Tieton	2 5
Ulster	2 4
Vic	2 5
Windsor	3
23_1_47	3
23_2_46	3
23_3_24	3
23_3_28	3
23_3_40	3
23_5_17	2 3
23_8_24	3
23_8_45	3
4.10.19-001	2 3
4.10.19-002	2 5
4.10.19-003	2 5
4.10.19-004	2 5
4.10.19-005	2 3
4.10.19-006	2 5
4.10.19-008	2 5
4.10.19-009	2 5
4.10.19-010	3 5
4.10.19-011	2 3
4.10.2-001	3 6
4.10.2-002	2 5
4.10.2-004	2 5
4.10.2-005	2 5
4.10.2-006	2 5
4.10.2-008	2 3
4.10.2-009	3 5
4.10.2-010	3 6
4.10.5-001	3
4.10.5-002	2 3
4.10.5-003	2
4.10.5-004	3
4.10.5-005	2 3
4.10.5-006	2
4.10.5-015	2 3
4.10.5-016	2 3
4.10.5-018	3
4.10.5-019	3
4.10.5-020	2 3
4.10.5-028	2 3
4.10.5-029	2 3
4.10.5-030	3 4
4.16.2-001	2 5
4.18.15-001	3
4.18.15-002	3
4.18.15-003	2 3
4.18.15-004	2 3
4.18.15-005	3
4.18.15-006	2 3
4.18.15-007	3 4
4.18.15-009	2 3
4.18.15-011	3
4.18.15-012	3
4.18.15-013	3
4.18.15-014	3
4.18.15-015	3
4.18.15-016	2 3
4.18.15-028	3
4.18.15-030	3
4.18.15-039	3
4.18.15-040	2 3
4.18.15-043	3
4.18.2-005	3 5
4.18.2-007	2 6
4.18.2-008	2 6
4.18.2-010	3 5
4.18.2-015	2 6
4.18.2-016	3 6
4.18.2-018	2 5
4.18.2-019	3 5
4.18.2-020	3 5
4.18.2-024	2 6
4.18.2-027	2 6
4.18.2-028	3 5
5.12.5-005	2 3
5.12.5-007	2 3
5.12.5-008	2 3
5.12.5-009	2 3
5.12.5-010	2
5.12.5-011	2
5.12.5-019	2
5.12.5-020	2 3
5.12.5-021	2 3
5.12.5-022	2
5.14.15-003	3
5.14.15-004	3
5.14.15-005	3 4
5.14.15-006	3
5.14.15-007	3
5.14.15-013	3
5.14.15-014	3
5.14.15-015	3 4
5.14.15-016	3 4
5.14.15-017	3 4
5.14.15-018	3
5.14.15-019	3
5.14.15-020	3 4
5.14.23-003	3
5.14.23-004	2 4
5.14.23-006	2 3
5.23.15-001	3
5.23.15-002	3
5.23.2-001	2 5
5.23.2-002	3 5
5.23.2-003	2 6
5.28.15-001	3 5
5.28.15-002	3
5.28.15-003	3
5.28.15-004	3
5.28.15-005	3 5
5.28.15-006	3
5.28.15-007	3 5
5.28.15-008	3 5
5.28.15-009	3
5.28.15-010	3 5
5.28.15-011	3
5.28.15-012	3
5.28.15-013	3
5.28.37-001	2 5
5.28.37-002	2 3
5.28.37-003	2 5
5.28.37-004	2 5
5.28.37-005	5
5.28.37-008	5
5.28.37-009	5
5.28.37-010	2 5
5.28.37-011	3 5
5.28.37-012	2
5.4.15-004	3 4
5.4.15-005	3 4
6.14.2-006	3 6
6.14.2-007	3 6
6.14.2-008	4 6
6.14.2-009	2 4
6.14.2-010	4 5
6.14.2-011	4 6
6.14.2-012	4 6
6.14.2-013	2 3
6.14.2-015	3 5
6.29.49-001	2
6.29.49-002	2
6.29.49-003	2
6.29.49-005	2
6.29.49-007	2 4
6.29.49-008	2
6.30.49-009	2 3
6.30.49-011	2
6.30.49-012	3 4
6.30.49-013	2 3
6.30.49-014	3 4
6.30.49-015	2 4
6.30.49-016	3 4
6.30.49-017	2
6.31.49-003	3
6.31.49-004	2
6.31.49-005	2 3
6.31.49-006	2
6.31.49-007	2 3
6.31.49-009	2 3
6.31.49-010	3
6.31.49-011	2 3
6.31.49-012	2
6.31.49-013	2
6.31.49-014	3
6.32.49-032	2
6.32.49-033	3 4
6.32.49-034	2 3
6.32.49-035	2 3
6.32.49-037	2 3
6.32.49-038	3 4
6.32.49-039	2
6.32.49-040	2 3
6.32.49-041	3 4
6.33.49-001	2
6.33.49-002	2
6.33.49-003	2 3
6.33.49-004	2 3
23-01-11	2 3
23-02-34	3
23-03-13	3
23-03-23	2 3
23-03-48	3
23-03-56	3
23-06-04	2 3
23-06-23	3
23-07-26	3
23-08-55	2 3
Dzherlo	2 3
Olympus	2 3
PC 7146-16	2
Kordia	3 6
Cristobalina	10 3
Vittoria	3
FR20T047	3 5
FR13T004	3 4
FR13T071	2 4
FR31T121	3
FR32T087	4 5
FR32T088	3 4
FR32T093	3 4
FR20T045	3
FR26T117	2 3
FR29T115	2 3
PC 9816-005	2 3
PC 9816-023	2 3
PC 9816-041	2 4
PC 9816-059	2 3
PC 9816-083	2 3
PC 9816-103	2 3
PC 9816-105	2 4
PC 9816-106	2 4
PC 9816-112	2 4
PC 9816-078	2 3
PC 9819-005	2 3
PC 9819-031	2 3
PC 9819-038	2 3
PC 9814-025	2
PC 9814-078	2 4
PC 9814-103	2 4
PC 9814-105	2
PC 9814-026	2 4
PC 9814-028	2 4
PC 9814-055	2 4
PC 9814-062	2 4
PC 9814-063	2 4
PC 9814-068	2 4
PC 9814-071	2
PC 9814-076	2
PC 9819-034	2 4
PC 9816-042	4
Emperor Francis	2 3
Black Republican	3 4
Krupnoplodnaya	2
Early Burlat	2 5
Venus	3 4
Moreau	2 3
Index	2
Sunburst	2
6.14.6-008	3 5
FR02T062	3 6
FR02T063	3 6
5.14.23.001	3 4
6.16.44-005	2 4
6.23.44-001	2 3
6.23.44-002	2 3
6.23.55-006	2 3
6.23.55-010	2 3
6.23.6-002	3
6.23.6-003	2
6.16.44-001	3 4
6.16.44-002	3 4
6.16.44-003	3 4
6.28.44-001	3
6.28.44-002	3 5
6.4.44-003	3 4
6.4.44-004	3 4
6.4.44-006	2 3
6.4.44-007	2 3
6.4.44-009	2 5
6.4.44-010	3 4
6.4.45-001	2 5
4.3.1-004	2 6
4.3.1-009	3 4
5.3.1-008	4 6
5.3.1-010	2 6
5.3.1-015	2 3
5.3.1-016	3 4
5.3.1-017	2 6
6.30.50-002	2 4
6.14.6-003	3 4
6.28.45-001	3
FR09T089	2 3
6.12.45-001	10 2
6.12.45-002	10 2
6.12.45-003	10 2
6.12.45-004	10 2
6.12.45-005	10 2
6.12.45-007	10 2
6.12.45-008	2 3
6.12.45-009	2 3
6.12.45-010	2 3
6.14.45-001	10 3
6.14.45-003	3
6.14.45-004	3
6.14.45-005	10 4
6.14.45-006	10 3
6.14.45-007	3
6.14.45-008	10 4
6.14.45-009	10 3
6.28.45-002	10 5
6.14.6-001	3 4
6.14.6-002	2 4
6.14.6-004	3 4
6.14.6-005	2 4
6.14.6-006	2 4
6.14.6-007	2 4
6.14.6-010	2 4
6.23.6-004	2
6.23.6-005	3
6.23.6-007	2
6.23.6-008	2 3
6.23.6-012	2 3
6.28.44-005	4 5
6.28.55-006	2 3
6.28.55-007	2 5
6.23.6-001	3
6.23.6-006	2 5
6.23.6-009	2
6.4.44-001	3 4
6.4.6-001	2 4
FR04T029	2 4
FR08T074	2 4
6.28.55-002	2 3
FR01T050	3 6
5.10.25-001	2 3
5.10.25-002	2
5.16.25-002	2 4
5.16.25-003	2 4
5.16.25-004	2 4
5.16.25-005	2
5.16.25-009	2 4
5.16.25-010	2
5.16.25-013	2
5.18.25-005	2 3
4.3.1-008	3 6
5.3.1-005	3
FR09T037	3
6.29.50-001	3 4
6.29.50-002	2 3
6.29.50-003	3 4
6.29.50-004	3 4
6.29.50-005	2 3
6.29.50-007	3 4
6.29.50-008	2 3
6.30.50-004	2 3
6.30.50-005	3 4
6.31.50-001	2 3
6.31.50-002	2 3
6.31.50-003	2 3
6.31.50-004	2 3
6.31.50-005	3
6.32.50-001	3 4
6.32.50-002	2 3
6.32.50-003	2 3
6.32.50-004	2 3
6.32.50-005	3 4
6.32.50-006	2 3
6.32.50-007	2 3
6.32.50-008	2 3
6.33.50-001	2 3
5.10.26-001	3
5.10.26-002	3
5.10.26-003	2 3
5.10.26-004	3
5.10.26-005	3
5.10.26-007	3
5.10.26-008	2 3
5.13.26-001	2 3
5.13.26-002	2
5.13.26-003	2
5.13.26-004	2 3
5.13.26-005	2
5.13.26-006	2
5.13.26-007	2 3
5.13.26-009	2 3
5.14.26-001	3 4
5.14.26-002	3
5.14.26-003	3
5.16.26-001	2
5.16.26-002	2 4
5.16.26-003	2
5.16.40-001	2 4
5.18.26-001	2 5
5.18.26-002	3
FR06T097	2 3
FR07T026	3 4
6.28.44-003	3
AA	2 4
PC 9816-069	2 4
PC 9816-079	2 4
PC 9816-096	2 3
PC 9816-104	2 3
PC 9816-114	2 4
PC 9817-097	2 3
4.18.15-010	2 3
4.18.15-042	2 3
4.18.15-047	3
4.18.15-048	3
4.3.1-003	3
4.3.1-005	3
4.3.1-006	3
4.3.1-007	3 6
5.3.1-009	3 6
5.3.1-011	3
5.3.1-012	3 6
5.3.1-013	3
5.3.1-014	3
5.4.15-001	2 3
5.4.15-002	2 3
5.4.15-003	3 4
FR01T070	3
FR49T083	3 5
5.16.17-003	2 4
5.16.25-006	2
5.16.25-008	2
5.16.25-012	2 4
5.20.6-001	2 4
6.16.44-008	2
6.4.45-003	4
6.4.6-004	2
6.4.6-006	2 4
6.4.6-007	2 4
6.4.6-008	2
6.4.6-009	3 4
5.16.17-001	2
5.16.17-004	2 4
6.14.17-001	2 3
6.14.17-002	2 3
6.14.17-003	2 4
6.14.17-004	2 4
6.14.17-005	2 3
FR02T024	2
4.14.17-001	3
5.13.26-008	2
6.28.44-004	5
4.3.1-001	3 6
5.3.1-007	3 6
5.3.1-018	3
5.10.40-001	3
5.10.40-002	2 4
5.10.40-003	3 4
5.10.40-004	3
5.10.40-005	3
5.10.40-007	2 4
5.10.40-008	2 3
5.10.40-009	3
5.10.40-010	3 4
5.10.40-011	2 4
5.10.40-012	2 3
5.10.40-013	2 4
5.10.40-014	2 4
5.10.40-015	2 3
5.10.40-016	3
5.10.40-017	2 4
5.13.40-002	2 3
5.13.40-003	2 3
5.13.40-004	2 4
5.16.40-003	4
5.16.40-004	3 4
6.30.50-001	2 3
6.30.50-003	3 4
6.10.55-001	3
6.10.55-002	2 3
6.10.55-003	2 3
6.10.55-004	3
6.10.55-005	2 3
6.10.55-006	3
6.10.55-007	3
6.10.55-008	3
6.10.55-009	3
6.10.55-010	3
6.16.55-001	2 3
6.16.55-002	2 3
6.23.17-001	3
6.23.55-002	3
6.23.55-005	2 3
6.23.55-007	3
6.23.55-008	3
6.28.55-001	3 5
6.28.55-003	3 5
6.28.55-004	3
6.28.55-005	3 5
5.13.40-001	2 5
5.16.25-001	2 3
5.18.25-004	2 3
5.3.1-006	2 3
6.16.44-004	2
6.16.44-006	4 5
6.16.44-007	4 5
6.16.44-009	2 5
6.23.17-003	2 4
6.23.17-004	3 5
Bertiolle	3 5
Napoleon	2 4

Map Positions


Haplotype Block	Map Name	Linkage Group	Start	Stop
Pav-HB-06-4	Sweet Cherry-RosBREED-1.6K-2019	6	9.17	9.64

Projects


Project Name
RosBREED_Sweet_Cherry_CRS_Haplotype_2020

Haplotypes

Marker	2	3	4	5	6	7	8	9	10	11	12	13	14
RosBREED_snp_sweet_cherry_Pp6_02122364	B	B	B	A	A	B	A	B	B	B	A	A	B
RosBREED_snp_sweet_cherry_Pp6_02247834	B	A	A	A	B	A	A	-	B	-	-	B	B
RosBREED_snp_sweet_cherry_Pp6_02373734	A	A	B	A	A	-	-	-	A	A	A	-	-
RosBREED_snp_tart_cherry_a_Pp6_02177630	A	A	A	A	A	A	A	A	B	A	A	A	A

Alignments

Feature Name	Type	Location	Analysis
Pp06	chromosome	Pp06:2835182..3086453.	Prunus persica Whole Genome Assembly v2.0 & Annotation v2.1 (v2.0.a1)