Ppe-HB-07-5

Haplotype Block Overview

Name	Ppe-HB-07-5
Species	Prunus persica
Stock Haplotype	[view all 70]
Haplotype	[view all]

Publications


Year	Publication
2019	Vanderzande S, Howard NP, Cai L, Da Silva Linge C, Antanaviciute L, Bink MCAM, Kruisselbrink JW, Bassil N, Gasic K, Iezzoni A, Van de Weg E, Peace C. High-quality, genome-wide SNP genotypic data for pedigreed germplasm of the diploid outbreeding species apple, peach, and sweet cherry through a common workflow. PloS one. 2019; 14(6):e0210928.

Stock Haplotype

Name	Haplotype
Redhaven	3 7
Loring	3 7
Lovell	3
Contender	7 8
BY01p6245	19 8
Clayton	7 8
Candor	3 7
Blazeprince	17 18
Bradley	2 3
Chinese Cling	8 9
Elberta	2 8
Redskin	9
Westbrook	60 61
Winblo	8
Bolinha	2 3
Early Crawford	2 3
Late Crawford	2 3
Biscoe	8 9
BY92P2710	27 5
Caroking	2 3
Encore	7
Intrepid	3
Reliance	37 38
Autumnglo	7
BY00P6346u	2 8
Challenger	7 8
EarlyRedFree	25 3
Flordaprince	34 49
Goldprince	51 7
Jefferson	55 8
Springprince	51 56
Tropic Beauty	34 57
TX2B136	2 51
Wiser	2 3
Galaxy	50 51
Harvester	52 9
Orange Cling	2 3
Raritan Rose	8
CAF 4	33 34
Arrington	2 3
A-699	2 6
A-708	7 8
CAF 2	30 31
CAF 3	12 32
Baifeng	23
St. John	3
White Country	12 8
A-657	2 3
A-663	2 3
A-665	2 4
A-672	2 5
A-773	2 8
A-778	2 5
Amoore Sweet	2 6
A-776	2 6
A-772	2 5
A-789	2 8
A-783	2 6
O'Henry	3
A-716	11
Belle of Georgia	2 8
Souvenirs	7 8
TXW1490-1	34 57
Zin Dai	23
TX2293-3	34 51
Carolina Gold	7 8
White River	7 8
Crimson Lady	47 48
TXW1293-1	34 57
A-760	13 8

Map Positions


Haplotype Block	Map Name	Linkage Group	Start	Stop
Ppe-HB-07-5	Peach-RosBREED-4K-2019	7	23.23	31.32

Projects


Project Name
RosBREED_Peach_CRS_Haplotype_2020

Haplotypes

Marker	HB-07-5_11	HB-07-5_12	HB-07-5_13	HB-07-5_17	HB-07-5_18	HB-07-5_19	HB-07-5_2	HB-07-5_23	HB-07-5_24	HB-07-5_25	HB-07-5_27	HB-07-5_28	HB-07-5_29	HB-07-5_3	HB-07-5_30	HB-07-5_31	HB-07-5_32	HB-07-5_33	HB-07-5_34	HB-07-5_36	HB-07-5_37	HB-07-5_38	HB-07-5_4	HB-07-5_42	HB-07-5_47	HB-07-5_48	HB-07-5_49	HB-07-5_5	HB-07-5_50	HB-07-5_51	HB-07-5_52	HB-07-5_55	HB-07-5_56	HB-07-5_57	HB-07-5_6	HB-07-5_60	HB-07-5_61	HB-07-5_7	HB-07-5_8	HB-07-5_9
snp_7_7722966	-	A	B	B	B	A	A	B	A	B	B	A	A	A	A	A	A	A	A	B	A	A	A	A	A	A	A	A	A	A	B	-	A	A	A	B	A	A	B	B
SNP_IGA_734873	B	B	B	A	B	A	A	B	B	B	A	A	B	A	B	A	A	B	B	B	A	A	A	B	B	B	B	B	B	B	A	A	B	B	B	A	A	A	B	B
SNP_IGA_734879	A	B	B	B	A	B	B	A	B	-	B	B	A	B	A	B	A	A	B	A	B	B	B	A	A	B	A	A	B	A	A	B	B	A	A	B	B	B	A	B
SNP_IGA_734887	B	A	A	A	B	A	A	B	A	B	A	A	B	A	B	A	B	A	B	B	A	A	A	B	B	A	A	B	A	B	B	A	A	A	B	A	A	A	B	A
SNP_IGA_734907	B	B	B	A	B	A	A	B	B	B	A	A	B	A	B	A	A	B	B	B	A	A	A	B	B	B	B	B	B	B	A	A	B	B	B	A	A	A	B	B
SNP_IGA_734921	B	B	B	A	B	A	A	B	B	A	A	-	-	B	B	A	A	B	B	-	B	A	B	-	B	B	B	B	B	B	A	A	B	B	B	B	A	A	B	B
SNP_IGA_734959	B	B	B	A	B	A	A	B	B	B	A	A	B	A	B	A	A	B	B	B	A	A	A	B	B	B	B	B	B	B	A	A	B	B	B	A	A	A	B	B
SNP_IGA_734987	A	B	A	B	A	B	B	A	A	A	B	B	A	B	B	B	B	B	B	A	B	B	B	B	A	A	A	A	A	B	B	B	B	B	B	B	B	B	A	A
SNP_IGA_735080	A	B	A	B	A	B	B	A	A	A	B	B	A	B	A	B	B	B	A	A	B	B	B	B	A	A	A	A	A	A	B	B	A	A	B	B	B	B	A	A
SNP_IGA_735110	A	A	A	B	A	B	B	A	A	A	B	B	A	B	A	A	B	A	A	A	B	B	B	A	A	A	A	A	A	A	B	B	A	A	A	B	A	B	A	A
SNP_IGA_735373	B	A	B	A	B	A	A	B	B	B	A	A	B	A	B	B	A	A	B	B	A	A	A	A	B	B	B	B	B	B	A	A	B	B	A	A	B	A	B	B
SNP_IGA_738499	A	B	A	B	A	A	B	A	B	A	B	B	B	B	A	B	B	B	A	A	B	B	B	A	B	A	A	B	A	A	B	B	A	A	B	B	B	B	A	A
SNP_IGA_738856	A	B	A	B	A	A	B	A	B	A	B	B	B	B	A	B	B	B	A	A	B	B	B	A	B	A	A	B	A	A	B	B	A	A	B	B	B	B	A	A
SNP_IGA_740785	B	B	B	A	B	B	A	B	A	B	A	A	A	A	B	B	A	B	B	B	A	A	A	B	A	B	B	A	B	B	A	A	B	B	B	A	A	A	B	B
SNP_IGA_740801	B	B	B	A	B	B	A	B	A	B	A	A	A	A	B	B	A	B	B	B	A	A	A	B	A	B	B	A	B	B	A	A	B	B	B	A	A	A	B	B
SNP_IGA_740837	B	B	B	A	B	B	A	B	A	B	A	A	A	A	B	B	A	B	B	B	A	A	A	B	A	B	B	A	B	B	A	A	B	B	B	A	A	A	B	B
SNP_IGA_740845	B	B	B	A	B	B	A	B	A	B	A	A	A	A	B	B	A	B	B	B	A	A	A	B	A	B	B	A	B	B	A	A	B	B	B	A	A	A	B	B
SNP_IGA_741063	A	B	A	B	A	A	B	A	B	A	B	B	B	B	A	B	B	B	A	A	B	B	B	A	B	A	A	B	A	A	B	B	A	A	B	B	B	B	A	A
SNP_IGA_741178	A	B	A	B	A	B	B	A	B	A	B	B	B	B	B	A	B	B	B	A	B	B	B	A	A	B	A	B	A	B	B	B	B	B	B	B	B	B	A	A
SNP_IGA_741325	B	A	B	A	B	A	A	B	A	B	A	A	A	A	A	B	A	A	A	B	A	A	A	B	A	B	B	A	B	A	A	A	A	A	A	A	A	A	B	B
SNP_IGA_741704	B	A	B	A	B	B	A	B	A	B	A	A	A	A	B	B	A	A	B	B	A	A	A	B	A	B	B	A	B	B	A	A	B	B	A	A	A	A	B	B
SNP_IGA_741769	B	A	B	A	B	B	A	B	A	B	A	A	A	A	B	A	A	A	B	B	A	A	A	B	B	A	B	A	B	B	A	A	B	B	A	A	A	A	B	B
SNP_IGA_741985	B	A	B	A	B	B	A	B	A	B	A	A	A	A	B	B	A	A	B	B	A	A	A	B	A	B	B	A	B	B	A	A	B	B	A	A	A	A	B	B
SNP_IGA_742048	B	A	B	A	B	B	A	B	A	B	A	A	A	A	B	B	A	A	B	B	A	A	A	B	B	A	B	A	B	B	A	A	B	B	A	A	A	A	B	B
SNP_IGA_742067	B	A	B	A	B	B	A	B	A	B	A	A	A	A	B	B	A	A	B	B	A	A	A	B	B	A	B	A	B	B	A	A	B	B	A	A	A	A	B	B
SNP_IGA_742392	A	B	A	B	A	A	B	A	B	A	B	B	B	B	A	B	B	B	A	A	B	B	B	A	A	B	A	B	A	A	B	B	A	A	B	B	B	B	A	A
SNP_IGA_743057	A	B	A	B	A	A	B	A	B	A	B	B	B	B	A	A	B	B	A	A	B	B	B	A	B	A	A	B	A	A	B	B	A	A	B	B	B	B	A	A
SNP_IGA_743063	A	B	A	B	A	A	B	A	B	A	B	B	B	B	A	A	B	B	A	A	B	B	B	A	B	A	A	B	A	A	B	B	A	A	B	B	B	B	A	A
SNP_IGA_743069	A	B	A	B	A	A	B	A	B	A	B	B	B	B	A	A	B	B	A	A	B	B	B	A	B	A	A	B	A	A	B	B	A	A	B	B	B	B	A	A
SNP_IGA_746619	A	A	A	A	B	A	A	A	B	B	A	A	A	A	B	A	A	A	A	B	B	A	A	A	A	A	A	A	A	A	B	A	A	A	A	B	A	A	B	A
SNP_IGA_748210	A	A	B	B	A	B	A	B	A	B	A	A	A	A	B	A	A	A	B	B	B	B	A	A	A	B	A	A	A	B	B	A	B	B	A	B	A	A	B	B
SNP_IGA_748301	B	B	B	B	B	A	B	B	B	B	B	B	B	B	B	B	B	B	A	B	B	B	B	A	A	B	A	B	B	A	B	B	A	A	B	B	B	B	B	B
SNP_IGA_748306	B	A	B	B	A	B	A	B	A	B	A	A	A	A	B	A	A	A	B	B	B	B	B	A	B	A	B	A	A	B	B	A	B	B	A	B	A	B	B	B
SNP_IGA_748434	B	A	B	B	A	B	A	B	A	B	A	A	A	A	B	A	A	A	B	B	B	B	B	B	A	B	B	A	A	B	B	A	B	B	A	B	A	B	B	B
SNP_IGA_748637	-	A	B	B	B	A	A	B	A	B	B	A	A	A	A	A	A	A	A	B	A	A	A	A	A	A	A	A	A	A	B	-	A	A	A	B	A	A	B	B
SNP_IGA_749366	A	B	B	A	A	A	B	A	B	A	A	B	B	B	A	B	B	B	A	-	A	A	A	B	A	B	A	B	A	A	A	B	A	A	B	B	B	A	A	A

Alignments

Feature Name	Type	Location	Analysis
Pp07	chromosome	Pp07:5806915..7829560.	Prunus persica Whole Genome Assembly v2.0 & Annotation v2.1 (v2.0.a1)