Ppe-HB-01-13

Haplotype Block Overview

Name	Ppe-HB-01-13
Species	Prunus persica
Stock Haplotype	[view all 72]
Haplotype	[view all]

Publications


Year	Publication
2019	Vanderzande S, Howard NP, Cai L, Da Silva Linge C, Antanaviciute L, Bink MCAM, Kruisselbrink JW, Bassil N, Gasic K, Iezzoni A, Van de Weg E, Peace C. High-quality, genome-wide SNP genotypic data for pedigreed germplasm of the diploid outbreeding species apple, peach, and sweet cherry through a common workflow. PloS one. 2019; 14(6):e0210928.

Stock Haplotype

Name	Haplotype
Redhaven	11 9
Loring	10 12
Lovell	47
Contender	14 22
BY01p6245	22 23
Clayton	9
Candor	24 9
Blazeprince	12
Bradley	8
Chinese Cling	10 13
Elberta	12
Redskin	11 14
Westbrook	45 8
Winblo	12 14
Bolinha	14
Early Crawford	12 14
Late Crawford	12
Springtime	35 36
Biscoe	14 48
BY92P2710	12
Caroking	10 12
Encore	12
Intrepid	14 9
Reliance	9
Autumnglo	12
BY00P6346u	14
Challenger	11 14
EarlyRedFree	12 24
Flordaprince	12 39
Goldprince	12
Jefferson	12
Springprince	12
Tropic Beauty	12 44
TX2B136	12
Wiser	46 47
Galaxy	12 40
Harvester	12 14
Orange Cling	12
Raritan Rose	19 48
CAF 4	9
Arrington	15 16
A-699	10 12
A-708	12
CAF 2	26 9
CAF 3	12 9
Baifeng	10 13
St. John	47
White Country	12 17
A-657	8
A-663	8 9
A-665	10 9
A-672	10 11
A-773	12
A-778	12 8
Amoore Sweet	12 8
A-776	10 9
A-772	10 12
A-789	10 17
A-783	10 12
Jean Han Hale	12
O'Henry	12
A-716	12
Belle of Georgia	10 14
Souvenirs	12
TXW1490-1	12
Zin Dai	10 13
TX2293-3	12 44
Carolina Gold	14 30
White River	10 12
Crimson Lady	37 38
TXW1293-1	12 44
A-760	12 9

Map Positions


Haplotype Block	Map Name	Linkage Group	Start	Stop
Ppe-HB-01-13	Peach-RosBREED-4K-2019	1	134.04	142.31

Projects


Project Name
RosBREED_Peach_CRS_Haplotype_2020

Haplotypes

Marker	HB-01-13_10	HB-01-13_11	HB-01-13_12	HB-01-13_13	HB-01-13_14	HB-01-13_15	HB-01-13_16	HB-01-13_17	HB-01-13_19	HB-01-13_22	HB-01-13_23	HB-01-13_24	HB-01-13_25	HB-01-13_26	HB-01-13_30	HB-01-13_31	HB-01-13_34	HB-01-13_35	HB-01-13_36	HB-01-13_37	HB-01-13_38	HB-01-13_39	HB-01-13_40	HB-01-13_44	HB-01-13_45	HB-01-13_46	HB-01-13_47	HB-01-13_48	HB-01-13_8	HB-01-13_9
SNP_IGA_103381	B	B	B	A	A	B	A	B	-	B	A	B	B	B	A	A	A	B	B	B	B	A	B	B	B	B	B	-	B	B
SNP_IGA_103422	B	A	A	B	A	A	B	B	-	B	B	B	A	A	A	A	A	B	A	A	A	B	A	B	A	A	B	-	B	B
SNP_IGA_103507	B	A	A	B	A	A	B	B	-	B	B	B	A	A	A	A	A	B	A	A	A	B	A	B	A	A	B	-	B	B
SNP_IGA_103712	A	B	B	B	B	B	B	B	-	A	B	A	B	B	B	B	B	B	B	B	B	A	B	A	B	B	B	-	B	B
SNP_IGA_103771	B	A	A	B	A	A	A	A	-	B	B	B	A	A	A	A	B	A	A	A	A	B	A	B	A	A	A	-	A	A
SNP_IGA_103900	A	A	B	B	B	B	B	B	-	A	A	A	B	B	B	B	B	B	B	A	B	A	B	A	B	B	B	-	B	B
SNP_IGA_103917	A	A	B	A	B	B	B	B	-	A	A	A	B	B	B	B	B	B	B	B	A	A	B	A	B	B	B	-	B	B
SNP_IGA_103965	A	A	B	A	B	B	B	B	-	A	A	A	B	B	B	B	A	B	B	B	A	A	B	A	B	B	B	-	B	B
SNP_IGA_104030	A	A	B	A	B	B	B	B	-	A	A	A	B	B	B	B	A	B	B	A	B	A	B	A	B	B	B	-	B	B
SNP_IGA_104108	B	B	A	B	A	A	A	A	-	B	B	B	A	A	A	A	B	A	A	A	B	B	A	B	A	A	A	-	A	A
SNP_IGA_104167	A	A	B	A	B	B	B	B	-	A	A	A	B	B	B	B	B	B	B	B	A	A	B	A	B	B	B	-	B	B
SNP_IGA_104180	B	B	A	B	A	A	B	B	-	B	B	B	A	A	A	A	A	A	A	A	B	B	A	B	A	A	A	-	B	A
SNP_IGA_104324	B	B	A	B	B	B	B	B	-	B	A	A	A	A	B	B	B	B	A	B	A	A	A	B	B	A	B	B	B	B
SNP_IGA_104332	A	A	B	A	A	A	A	A	-	A	B	B	B	B	A	A	A	B	A	B	A	B	B	A	A	A	B	A	A	A
SNP_IGA_104455	B	B	A	B	B	B	A	B	-	B	B	A	A	A	B	B	B	B	A	B	A	B	A	B	B	A	B	B	B	B
SNP_IGA_104466	B	B	A	B	B	B	A	B	-	B	B	A	A	A	B	B	B	B	A	B	A	B	A	B	B	A	B	B	B	B
SNP_IGA_104812	B	B	B	A	A	B	A	A	-	A	A	B	B	B	-	A	A	B	A	B	B	A	B	A	A	A	B	B	A	A
SNP_IGA_104819	A	A	A	B	B	A	B	B	-	B	B	A	A	A	-	B	B	B	A	A	A	B	A	A	B	A	B	A	B	B
SNP_IGA_104857	B	B	B	B	A	A	B	A	-	A	B	B	B	B	-	A	B	A	B	B	B	B	B	B	A	B	A	B	A	A
SNP_IGA_104890	A	A	A	B	B	B	A	B	-	B	B	A	A	A	B	B	A	B	A	A	A	B	A	B	B	B	A	A	B	B
SNP_IGA_105106	A	A	B	A	A	B	A	A	-	A	A	B	B	B	A	B	A	B	A	A	B	A	B	B	A	A	B	A	A	A
SNP_IGA_105122	A	A	A	B	B	B	A	B	-	B	B	A	A	A	B	A	A	B	A	A	A	B	A	A	B	A	B	A	B	B
SNP_IGA_105206	B	B	A	B	B	B	A	B	-	B	B	A	A	A	B	A	B	A	B	A	B	B	A	A	B	B	A	B	B	B
SNP_IGA_105536	A	A	B	A	A	B	A	A	B	A	A	B	B	B	A	B	A	A	B	A	B	A	B	A	A	A	B	A	A	A
SNP_IGA_105878	B	B	A	A	A	A	A	A	A	A	A	A	A	B	A	A	A	A	A	A	B	A	A	A	A	A	A	B	A	A
SNP_IGA_105890	A	A	B	B	B	B	B	B	B	B	B	B	B	A	B	B	B	B	B	A	B	B	B	B	B	B	B	A	B	B
SNP_IGA_106000	B	B	A	B	B	B	A	B	A	B	A	A	A	B	B	A	A	B	A	A	B	B	A	A	B	B	A	B	B	B
SNP_IGA_106146	A	A	B	A	A	A	B	B	B	A	A	B	B	A	A	B	B	B	B	B	A	A	B	A	A	B	B	A	A	A
SNP_IGA_106177	A	A	B	A	A	B	A	B	B	A	A	B	B	A	A	B	B	B	B	B	A	A	B	A	A	B	B	A	A	A
SNP_IGA_106673	A	A	A	B	B	B	A	A	A	B	B	A	A	A	B	A	A	A	A	A	A	B	A	A	B	A	A	A	B	B
SNP_IGA_106756	B	B	B	A	A	B	A	B	B	A	A	B	B	B	A	B	B	B	B	B	B	A	B	B	A	B	B	B	A	A
SNP_IGA_106841	A	A	A	B	B	A	B	A	A	B	B	A	A	A	B	A	A	A	A	A	A	B	A	A	B	A	A	A	B	B
SNP_IGA_107029	B	B	A	A	B	B	A	A	A	B	B	B	A	B	B	A	B	A	A	A	B	B	B	B	B	A	A	B	B	B
SNP_IGA_107581	A	A	B	A	A	B	A	B	B	A	B	B	A	A	A	B	B	B	B	B	A	B	A	A	A	B	B	A	A	A
SNP_IGA_107619	B	B	A	B	A	A	A	A	A	A	A	A	B	B	A	A	A	A	A	B	A	A	B	A	A	A	A	B	A	A
SNP_IGA_107745	B	B	A	B	A	A	A	A	A	A	A	A	B	B	A	A	A	A	A	B	A	A	B	A	B	A	A	B	A	A

Alignments

Feature Name	Type	Location	Analysis
Pp01	chromosome	Pp01:33510763..35577822.	Prunus persica Whole Genome Assembly v2.0 & Annotation v2.1 (v2.0.a1)