scaffold_4:1621642

Marker Overview


Name	scaffold_4:1621642
dbSNP ID	N/A
Type	SNP
SNP Alleles	T/C
5' Flanking Sequence	ACAAAATAGAAGCATAATTTCTTGTGTAACAAGAATATACATAACACAACAATTTCCTTT GTTTCCAATGGCAAATTGGCATTCTTCAGATAAGGAAAAGC
3' Flanking Sequence	AGAGAACAATTTCATTAAGTAGAGTCTCAATTGCATTGCATTGGACACTTGTTTTTTTTG TATTTTTTTTGGTTTAATCCAAAAGAAACAGAAATGAGGGG
Species	Prunus avium
Publication	[view all]
Contact	Stijn Vanderzande
Comment	weet cherry SNPs identified by Peace et al (2012) that were not used for the original 6K SNP array - intragenic SNPs

Contact

Name

Details

Stijn Vanderzande

First name:	Stijn
Last name:	Vanderzande
Address:	Laboratory for Fruit Breeding and Biotechnology - Willem de Croylaan 42 - B-3001 Heverlee - Belgium
Country:	Belgium
Email:	stijn.vanderzande@wsu.edu

Alignments

The following features are aligned


Feature Name	Type	Location	Analysis	Reference
Pp04	chromosome	Pp04:1621744..1621744 .	Prunus persica Whole Genome Assembly v2.0 & Annotation v2.1 (v2.0.a1)	n/a

Publications


Year	Publication
2020	Vanderzande S, Zheng P, Cai L, Barac G, Gasic K, Main D, Iezzoni A and Peace C. The cherry 6+9K SNP array: a cost-effective improvement to the cherry 6K SNP array for genetic studies. Scientific Reports 10, 7613 (2020). https://doi.org/10.1038/s41598-020-64438-x

Sequence

>scaffold_4:1621642 ID=scaffold_4:1621642; Name=scaffold_4:1621642; organism=Prunus avium; type=genetic_marker; length=203bp
ACAAAATAGAAGCATAATTTCTTGTGTAACAAGAATATACATAACACAAC
AATTTCCTTTGTTTCCAATGGCAAATTGGCATTCTTCAGATAAGGAAAAG
CYAGAGAACAATTTCATTAAGTAGAGTCTCAATTGCATTGCATTGGACAC
TTGTTTTTTTTGTATTTTTTTTGGTTTAATCCAAAAGAAACAGAAATGAG
GGG