scaffold_1:10882040

Marker Overview
Namescaffold_1:10882040
dbSNP IDN/A
SNP Array ID
Cherry 6+9K SNP array:scaffold_1:10882040
TypeSNP
SNP AllelesG/T
5' Flanking SequenceGGTCGGTCATCTATGGCCGCAGCCGTGGCTACCATATGGAAAAGCTCTGCCTCATCAGAA GGAGCCATCACCACCATGTTAGGCAGGCATGCCATAAAAGT
3' Flanking SequenceACATCAAAAGACCCACAATGCGTGGGACCATCAGCTCCAACCAGTCCAGCTCGGTCCATG GCAAATCTCACAGGCAGCTTCTGCAAATCTACATCATGTAC
SpeciesPrunus avium
Publication[view all]
ContactStijn Vanderzande
Commentweet cherry SNPs identified by Peace et al (2012) that were not used for the original 6K SNP array - intragenic SNPs
Contact
NameDetails
Stijn Vanderzande
First name:Stijn
Last name:Vanderzande
Address:Laboratory for Fruit Breeding and Biotechnology - Willem de Croylaan 42 - B-3001 Heverlee - Belgium
Country:Belgium
Email:stijn.vanderzande@wsu.edu
Libraries
Library NameType
Cherry 6+9K SNP arraySNP_chip
Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Sweet Cherry-RosBREED-3.8K-20201N/A39.35scaffold_1:10882040View
2Sweet Cherry-VxC-F1-6+9K_array1N/A54.74scaffold_1:10882040View
Sequence
>scaffold_1:10882040 ID=scaffold_1:10882040; Name=scaffold_1:10882040; organism=Prunus avium; type=genetic_marker; length=203bp
GGTCGGTCATCTATGGCCGCAGCCGTGGCTACCATATGGAAAAGCTCTGC
CTCATCAGAAGGAGCCATCACCACCATGTTAGGCAGGCATGCCATAAAAG
TKACATCAAAAGACCCACAATGCGTGGGACCATCAGCTCCAACCAGTCCA
GCTCGGTCCATGGCAAATCTCACAGGCAGCTTCTGCAAATCTACATCATG
TAC
Alignments
Feature NameTypeLocationAnalysis
Pp01 chromosome Pp01:11330027..11330027. Prunus persica Whole Genome Assembly v2.0 & Annotation v2.1 (v2.0.a1)
PAV_r1.0chr1 chromosome PAV_r1.0chr1:8993296..8993296. Prunus avium Whole Genome Assembly v1.0 & Annotation v1 (v1.0.a1)