scaffold_1:24993640

Marker Overview
Namescaffold_1:24993640
dbSNP IDN/A
SNP Array ID
Cherry 6+9K SNP array:scaffold_1:24993640
TypeSNP
SNP AllelesT/G
5' Flanking SequenceCCTGAATCCAAGCAAAAAGAAGAATTAAAAACAAAAGATTCTAATGGCCTCAACATATTT TATTTGAGTACAGCAAAGGGTCACATGTGATCTAATGAGCT
3' Flanking SequenceGCTGCCTATGGCAAGCCCTTTTCAATGGAATTGGTGGGTCTGAAAATGAACCATCTACAA TCTGATCAAACACCCTTTTGTTAGCTGCTTGAGTGTAATGC
SpeciesPrunus avium
Publication[view all]
ContactStijn Vanderzande
Commentweet cherry SNPs identified by Peace et al (2012) that were not used for the original 6K SNP array - intragenic SNPs
Contact
NameDetails
Stijn Vanderzande
First name:Stijn
Last name:Vanderzande
Address:Laboratory for Fruit Breeding and Biotechnology - Willem de Croylaan 42 - B-3001 Heverlee - Belgium
Country:Belgium
Email:stijn.vanderzande@wsu.edu
Libraries
Library NameType
Cherry 6+9K SNP arraySNP_chip
Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Sweet Cherry-RosBREED-3.8K-20201N/A68.02scaffold_1:24993640View
2Sweet Cherry-VxC-F1-6+9K_array1N/A92.54scaffold_1:24993640View
Sequence
>scaffold_1:24993640 ID=scaffold_1:24993640; Name=scaffold_1:24993640; organism=Prunus avium; type=genetic_marker; length=203bp
CCTGAATCCAAGCAAAAAGAAGAATTAAAAACAAAAGATTCTAATGGCCT
CAACATATTTTATTTGAGTACAGCAAAGGGTCACATGTGATCTAATGAGC
TKGCTGCCTATGGCAAGCCCTTTTCAATGGAATTGGTGGGTCTGAAAATG
AACCATCTACAATCTGATCAAACACCCTTTTGTTAGCTGCTTGAGTGTAA
TGC
Alignments
Feature NameTypeLocationAnalysis
Pp01 chromosome Pp01:25967951..25967951. Prunus persica Whole Genome Assembly v2.0 & Annotation v2.1 (v2.0.a1)
PAV_r1.0chr1 chromosome PAV_r1.0chr1:19913029..19913029. Prunus avium Whole Genome Assembly v1.0 & Annotation v1 (v1.0.a1)