scaffold_8:21801608

Marker Overview
Namescaffold_8:21801608
dbSNP IDN/A
SNP Array ID
Cherry 6+9K SNP array:scaffold_8:21801608
TypeSNP
SNP AllelesA/G
5' Flanking SequenceTTACATGGAAGGCAAGAAAAGGATGGCGTTGGTATGTTGTCTTATCACCACCTTGTAGTT CTGCTGTCTTTAAAATCATCTCACTACTTTATTTGTTAATT
3' Flanking SequenceTGCAGATCTTAACAGTGAAAGCAGGCGGAGAAGATTATCACAATACGTCTTGCCTGCTAA AACAAGCCTCACCGTATATGGAGATCAAGTAAAATCCTCCA
SpeciesPrunus avium
Publication[view all]
ContactStijn Vanderzande
Commentweet cherry SNPs identified by Peace et al (2012) that were not used for the original 6K SNP array - intragenic SNPs
Contact
NameDetails
Stijn Vanderzande
First name:Stijn
Last name:Vanderzande
Address:Laboratory for Fruit Breeding and Biotechnology - Willem de Croylaan 42 - B-3001 Heverlee - Belgium
Country:Belgium
Email:stijn.vanderzande@wsu.edu
Libraries
Library NameType
Cherry 6+9K SNP arraySNP_chip
Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Sweet Cherry-RosBREED-3.8K-20208N/A69.3scaffold_8:21801608View
Sequence
>scaffold_8:21801608 ID=scaffold_8:21801608; Name=scaffold_8:21801608; organism=Prunus avium; type=genetic_marker; length=203bp
TTACATGGAAGGCAAGAAAAGGATGGCGTTGGTATGTTGTCTTATCACCA
CCTTGTAGTTCTGCTGTCTTTAAAATCATCTCACTACTTTATTTGTTAAT
TRTGCAGATCTTAACAGTGAAAGCAGGCGGAGAAGATTATCACAATACGT
CTTGCCTGCTAAAACAAGCCTCACCGTATATGGAGATCAAGTAAAATCCT
CCA
Alignments
Feature NameTypeLocationAnalysis
Pp08 chromosome Pp08:22545836..22545836. Prunus persica Whole Genome Assembly v2.0 & Annotation v2.1 (v2.0.a1)
PAV_r1.0chr8 chromosome PAV_r1.0chr8:20731917..20731917. Prunus avium Whole Genome Assembly v1.0 & Annotation v1 (v1.0.a1)