S4_5441523

Marker Overview

Name

S4_5441523

dbSNP ID

N/A

SNP Array ID

Cherry 6+9K SNP array:

S4_5441523

Type

SNP

SNP Alleles

T/C

5' Flanking Sequence

CTTGACAAATAAATGAATTAGTATTAATTACTTCAATCACTCAATTTGGT

3' Flanking Sequence

ATGATTATGTTTAATTTTGAGTCGGTTAATTGCCTTTGAAATTGATGGAT

Species

Prunus cerasus

Publication

[view all]

Contact

Stijn Vanderzande

Comment

SNPs identified from GBS on P. fruticosa by Barac (2016) which were used to represent SNPs of the fruticosa subgenome of tart cherry

Contact

Name

Details

Stijn Vanderzande

First name:	Stijn
Last name:	Vanderzande
Address:	Laboratory for Fruit Breeding and Biotechnology - Willem de Croylaan 42 - B-3001 Heverlee - Belgium
Country:	Belgium
Email:	stijn.vanderzande@wsu.edu

Libraries


Library Name	Type
Cherry 6+9K SNP array	SNP_chip

Alignments

The following features are aligned


Feature Name	Type	Location	Analysis	Reference
Pp04	chromosome	Pp04:6072143..6072143 .	Prunus persica Whole Genome Assembly v2.0 & Annotation v2.1 (v2.0.a1)	n/a
PAV_r1.0chr4	chromosome	PAV_r1.0chr4:7185158..7185158 .	Prunus avium Whole Genome Assembly v1.0 & Annotation v1 (v1.0.a1)	n/a

Publications


Year	Publication
2020	Vanderzande S, Zheng P, Cai L, Barac G, Gasic K, Main D, Iezzoni A and Peace C. The cherry 6+9K SNP array: a cost-effective improvement to the cherry 6K SNP array for genetic studies. Scientific Reports 10, 7613 (2020). https://doi.org/10.1038/s41598-020-64438-x

Sequence

>S4_5441523 ID=S4_5441523; Name=S4_5441523; organism=Prunus cerasus; type=genetic_marker; length=101bp
CTTGACAAATAAATGAATTAGTATTAATTACTTCAATCACTCAATTTGGT
YATGATTATGTTTAATTTTGAGTCGGTTAATTGCCTTTGAAATTGATGGA
T