scaffold_2:16700672

Marker Overview


Name	scaffold_2:16700672
dbSNP ID	N/A
Type	SNP
SNP Alleles	T/G
5' Flanking Sequence	ATTAGGGCCATTGTTCCAATTGCGAATTACAATGAGAAGGACAAGACTTTTGTGTATCAG GAAGAGGGGATGGCGGTGTTTAAGCTGTATGCTGTGCATTC
3' Flanking Sequence	GGGCATGAGCCAGGTCCGTTGGATGGGAATGCAAGGATTATGCATCGAGTTGTGGGGCAC AAAGGTGGGCTTTTGATGGATCAGGATACTGTGTACGGTGT
Species	Prunus cerasus
Publication	[view all]
Contact	Stijn Vanderzande
Comment	ntragenic SNPs representing the fruticosa subgenome of tart cherry identified by Peace et al (2012) but not used for the original 6K SNP array

Contact

Name

Details

Stijn Vanderzande

First name:	Stijn
Last name:	Vanderzande
Address:	Laboratory for Fruit Breeding and Biotechnology - Willem de Croylaan 42 - B-3001 Heverlee - Belgium
Country:	Belgium
Email:	stijn.vanderzande@wsu.edu

Publications


Year	Publication
2020	Vanderzande S, Zheng P, Cai L, Barac G, Gasic K, Main D, Iezzoni A and Peace C. The cherry 6+9K SNP array: a cost-effective improvement to the cherry 6K SNP array for genetic studies. Scientific Reports 10, 7613 (2020). https://doi.org/10.1038/s41598-020-64438-x

Sequence

>scaffold_2:16700672 ID=scaffold_2:16700672; Name=scaffold_2:16700672; organism=Prunus cerasus; type=genetic_marker; length=203bp
ATTAGGGCCATTGTTCCAATTGCGAATTACAATGAGAAGGACAAGACTTT
TGTGTATCAGGAAGAGGGGATGGCGGTGTTTAAGCTGTATGCTGTGCATT
CKGGGCATGAGCCAGGTCCGTTGGATGGGAATGCAAGGATTATGCATCGA
GTTGTGGGGCACAAAGGTGGGCTTTTGATGGATCAGGATACTGTGTACGG
TGT

Alignments

Feature Name	Type	Location	Analysis
Pp02	chromosome	Pp02:20277184..20277184.	Prunus persica Whole Genome Assembly v2.0 & Annotation v2.1 (v2.0.a1)