scaffold_1:73215

Marker Overview
Namescaffold_1:73215
dbSNP IDN/A
SNP Array ID
Cherry 6+9K SNP array:scaffold_1:73215
TypeSNP
SNP AllelesA/G
5' Flanking SequenceATGATACAGCCCAGTTTCTGGAAAGACCCCGAGACAGCAATAAGGAATGCTTACTGCTCC ACAGATAAGTTTATTTTAGATCATTCCATGCAATTAGGGCC
3' Flanking SequenceGGTGGGTCGACTGCAGTAACTGCAATAGTCATTGACGGCAAAGACTTATGGGTCGCAAAT GTTGGTGACTCAAGAGCTGTTGTGTGTGAGAGGGGTTCTGC
SpeciesPrunus cerasus
Publication[view all]
ContactStijn Vanderzande
Commentntragenic SNPs representing the fruticosa subgenome of tart cherry identified by Peace et al (2012) but not used for the original 6K SNP array
Contact
NameDetails
Stijn Vanderzande
First name:Stijn
Last name:Vanderzande
Address:Laboratory for Fruit Breeding and Biotechnology - Willem de Croylaan 42 - B-3001 Heverlee - Belgium
Country:Belgium
Email:stijn.vanderzande@wsu.edu
Libraries
Library NameType
Cherry 6+9K SNP arraySNP_chip
Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Sweet Cherry-RosBREED-3.8K-20201N/A0.14scaffold_1:73215View
Sequence
>scaffold_1:73215 ID=scaffold_1:73215; Name=scaffold_1:73215; organism=Prunus cerasus; type=genetic_marker; length=203bp
ATGATACAGCCCAGTTTCTGGAAAGACCCCGAGACAGCAATAAGGAATGC
TTACTGCTCCACAGATAAGTTTATTTTAGATCATTCCATGCAATTAGGGC
CRGGTGGGTCGACTGCAGTAACTGCAATAGTCATTGACGGCAAAGACTTA
TGGGTCGCAAATGTTGGTGACTCAAGAGCTGTTGTGTGTGAGAGGGGTTC
TGC
Alignments
Feature NameTypeLocationAnalysis
Pp01 chromosome Pp01:73213..73213. Prunus persica Whole Genome Assembly v2.0 & Annotation v2.1 (v2.0.a1)
PAV_r1.0chr1 chromosome PAV_r1.0chr1:89866..89866. Prunus avium Whole Genome Assembly v1.0 & Annotation v1 (v1.0.a1)