scaffold_6:23124707

Marker Overview

Name

scaffold_6:23124707

dbSNP ID

N/A

SNP Array ID

Cherry 6+9K SNP array:

scaffold_6:23124707

Type

SNP

SNP Alleles

A/G

5' Flanking Sequence

ACTTGCATATAGGTAGGCATATTTAAGGATAATCTACCTGCTTAAGGTGTTGATTAGGGC GGTTGGATTCATGGGGTAGTACTAATTAGAGAGCAATTTGT

3' Flanking Sequence

AACTAGTCTGCTTAATTAGTATTAAAGTTGCCTAAATCATGCAGATTCGGACTCATACGT ATACTATAATGAAGTAGGTTTAGGACCCTAATTAAGCCTTC

Species

Prunus cerasus

Publication

[view all]

Contact

Stijn Vanderzande

Comment

ntragenic SNPs representing the fruticosa subgenome of tart cherry identified by Peace et al (2012) but not used for the original 6K SNP array

Contact

Name

Details

Stijn Vanderzande

First name:	Stijn
Last name:	Vanderzande
Address:	Laboratory for Fruit Breeding and Biotechnology - Willem de Croylaan 42 - B-3001 Heverlee - Belgium
Country:	Belgium
Email:	stijn.vanderzande@wsu.edu

Libraries


Library Name	Type
Cherry 6+9K SNP array	SNP_chip

Alignments

The following features are aligned


Feature Name	Type	Location	Analysis	Reference
Pp06	chromosome	Pp06:24988989..24988989 .	Prunus persica Whole Genome Assembly v2.0 & Annotation v2.1 (v2.0.a1)	n/a
PAV_r1.0chr6	chromosome	PAV_r1.0chr6:17910896..17910896 .	Prunus avium Whole Genome Assembly v1.0 & Annotation v1 (v1.0.a1)	n/a

Publications


Year	Publication
2020	Vanderzande S, Zheng P, Cai L, Barac G, Gasic K, Main D, Iezzoni A and Peace C. The cherry 6+9K SNP array: a cost-effective improvement to the cherry 6K SNP array for genetic studies. Scientific Reports 10, 7613 (2020). https://doi.org/10.1038/s41598-020-64438-x

Sequence

>scaffold_6:23124707 ID=scaffold_6:23124707; Name=scaffold_6:23124707; organism=Prunus cerasus; type=genetic_marker; length=203bp
ACTTGCATATAGGTAGGCATATTTAAGGATAATCTACCTGCTTAAGGTGT
TGATTAGGGCGGTTGGATTCATGGGGTAGTACTAATTAGAGAGCAATTTG
TRAACTAGTCTGCTTAATTAGTATTAAAGTTGCCTAAATCATGCAGATTC
GGACTCATACGTATACTATAATGAAGTAGGTTTAGGACCCTAATTAAGCC
TTC