Apple_Haplotype_Rymenants_2020

Project Overview
Project Name Apple_Haplotype_Rymenants_2020
Description Acidity and sweetness are important qualities for apple breeders and understanding their genetic regulation can improve the breeding process. In previous QTL studies, fruit quality assessments were performed using instrumental measurements, leading to the identification of two major QTL Ma and Ma3. Here, we use sensorial data to investigate the role of known and unknown genetic factors in the perception of acidity and sweetness in three pedigreed full-sib families. For 2 years, these families were phenotyped by a trained panel, at harvest and after 2 months of cold storage, and genotyped with a new 50 K SNP array. FlexQTLTM analyses using both an additive and an additive + dominance model resulted in the identification of Ma and Ma3 for acidity as well as sweetness, whereas the use of the additive model yielded decisive evidence for the discovery of two additional QTL on LG1 and LG6 for acidity. QTL genotypes were qualified as the inverse of each other, which indicates that individuals with the less-acidity alleles of Ma and Ma3 are perceived sweeter. Due to the genetic configuration in the families studied, resulting from a link with the Pale Green Disorder locus, no incomplete dominance effect could be detected for the Ma locus, although previously reported in the literature. For the Ma3 locus, however, an incomplete dominance effect (58%) is reported here for the first time. The Ma3 locus was also further confined to a 2–4-cM region and a predictive marker for this locus was identified.
Crop apple
Project type genotype
Sub type haplotype
Genetic Maps
This project contains 4 Maps:
Name
Apple-NC-F1
Apple-ZF-F1
Apple-BB-F1
Apple-NCZFBB-consensus
Page
1
Stocks
This project contains 452 stocks:
NameType
0403-0017accession
0409F-0010accession
0410-0023accession
0411D-0001accession
0411D-0007accession
0418-0008accession
0418-0010accession
0418-0012accession
0606-0800accession
CV12-16B-15-9816accession
CV12-32B-86-0218accession
CV16-2-117-0305accession
CV16-2-210-0305accession
CV16-2-223-0305accession
0509-0024accession
0513-0736accession
0513-0076accession
0513-0568accession
0513-0574accession
0606-0768accession
0606-0069accession
0509-0043accession
0510-0066accession
0606-0662accession
0606-0626accession
Page
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9
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Contact
NameDetails
Marijn Rymenants
First name:Marijn
Last name:Rymenants
Title:researcher
Institution:Better3fruit
Address:Steenberg 36, 3202 Rillaar
Email:marijn@better3fruit.com
Phone:+32 (0)16 24 16 10
Keywords:genetics