DM16HB7 | GDR

Haplotype Block Overview

Stock Haplotype

Haplotype Block Overview

Name	DM16HB7
Species	Malus x domestica
Stock Haplotype	[view all 19]
Haplotype	[view all]

Alignments

The following features are aligned


Feature Name	Type	Location	Analysis	Reference
Chr16	chromosome	Chr16:3409835..3502013 .	Malus x domestica GDDH13 v1.1 Whole Genome Assembly & Annotation	Rymenants M, van de Weg E, Auwerkerken A, De Wit I, Czech A, Nijland B, Heuven H, De Storme N, and Keulemans W. Detection of QTL for apple fruit acidity and sweetness using sensorial evaluation in multiple pedigreed full-sib families. Tree Genetics & Genomes 16, 71 (2020). https://doi.org/10.1007/s11295-020-01466-8

Publications


Year	Publication
2020	Rymenants M, van de Weg E, Auwerkerken A, De Wit I, Czech A, Nijland B, Heuven H, De Storme N, and Keulemans W. Detection of QTL for apple fruit acidity and sweetness using sensorial evaluation in multiple pedigreed full-sib families. Tree Genetics & Genomes 16, 71 (2020). https://doi.org/10.1007/s11295-020-01466-8

Stock Haplotype

Name	Haplotype
Cox's Orange Pippin	3
Golden Delicious	6
Fuji	3
Gala	3
Elstar	6
Cripps Pink	6 7
Ralls Janet	3
Delicious	3
Ingrid Marie	3
Braeburn	5
Delcorf	3
Jongrimes	3
Kidd's Orange Red	3
Winesap	5
Grimes Golden	6
Zari	3
B3F44	5
B3FS1	5
Nicore	5

Map Positions


Haplotype Block	Map Name	Linkage Group	Start	Stop
DM16HB7	Apple-NCZFBB-consensus	16	17.18	17.18

Projects


Project Name
Apple_Haplotype_Rymenants_2020

Haplotypes

Marker	3	4	5	6	7	8
AX-105175698	A	B	A	B	B	A
AX-105175837	B	A	B	A	A	B
AX-105175973	B	A	B	A	A	B
AX-105188986	A	B	A	B	B	A
AX-105199348	A	B	A	B	B	A
AX-105212498	A	B	A	B	B	A
AX-105215637	B	A	B	A	-	-
GDsnp01734	B	A	A	A	A	A
RosBREEDSNP_SNP_CT_1540624_Lg16_LAR1_MAF40_1618769_exon2	B	A	B	A	-	-
RosBREEDSNP_SNP_GT_1578941_Lg16_01734_MAF20_90585_exon1	B	B	B	A	B	B
RosBREEDSNP_SNP_GT_1614876_Lg16_01734_MAF40_975544_exon1	A	B	A	B	B	A