Tutorial: SNP Genotype Search

Search SNP Genotype is a page where users can search for the SNP genotyope dataset based on the germplasm and SNP markers used in the dataset. Click the next tab to search for SSR Genotype. To search for SNP genotype data only for cultivars and breeding selections please visit the 'Search Genotyping Data' page in the Breeders Toolbox.

All the search categories below can be combined.

1. Dataset

Users can search SNP genotype data by dataset from a dropdown list.

2. Species

Users can search for SNP genotype dataset from a specific species by choosing from the drop-down menu.

3. Germplasm Name

Users can search for SNP genotype dataset from a specific germplasm by choosing from the drop-down menu.

4. SNP

Users can search for SNP genotype dataset that used a specific marker by typing the marker name in the text box. Users can search for an exact match, contains, starts with or ends with the input, by selecting the desired option from the drop-down menu.

5. Genome

Users can search SNP genotype data by the anchored position of SNPs in one of the whole genome sequences. Choose a genome in the drop-down menu next to 'Genome' then the corrposponding chromosome or scaffold names will by dynamically generated  in the 'Chr/Scaffold' drop-down menu. Choose any option and then type in the position in bp in the text boxes. 


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