BPPCT008, BPPCT008 (genetic_marker) Prunus persica

Marker Overview


Name	BPPCT008
Genbank ID	N/A
Type	SSR
Species	Prunus persica
Germplasm	OHenry
Source Type	Genomic DNA
Repeat Motif	(GA)36
PCR Condition	94 C 1 min, 94 C 45 sec, 57 C 45 sec, 72 C 2 min. 35 cycles, 72 C 4min
Primer 1	BPPCT008.F primer: ATGGTGTGTATGGACATGATGA
Primer 2	BPPCT008.Forward primer: ATGGTGTGTATGGACATGATGA
Primer 3	BPPCT008.R primer: CCTCAACCTAAGACACCTTCACT
Primer 4	BPPCT008.Reverse primer: CCTCAACCTAAGACACCTTCACT
Product Length	148
Polymorphism	P_ BPPCT008
Publication	[view all]
Contact	E. Dirlewanger Amy Iezzoni
Associated With	GWAS0001949

Contact

Name

Details

E. Dirlewanger

First name:	Elisabeth
Last name:	Dirlewanger
Institution:	INRA
Address:	Unite de Recherche sur les Especes Fruitieres et la Vigne, Centre de Bordeaux, BP 81, 33883 Villenave d Ornon cedex, France
Country:	France
Email:	dirlewan@bordeaux.inra.fr

Amy Iezzoni

Alignments

The following features are aligned


Feature Name	Type	Location	Analysis	Reference
scaffold_6	supercontig	scaffold_6:10280088..10280088 .	Prunus persica Whole Genome v1.0 Assembly & Annotation	n/a
PAV06_REGINA	chromosome	PAV06_REGINA:10479305..10479438 .	Prunus avium Regina Genome v1.0 Assembly & Annotation	GDR marker alignment to genome using primer sequences
chr_6	chromosome	chr_6:13562209..13562316 .	Prunus avium Tieton Genome v2.0 Assembly & Annotation	GDR marker alignment to genome using primer sequences

Analyses

This genetic_marker is derived from or has results from the following analyses


Analysis Name	Date Performed
GDR Markers Database	2004-01-01

Publications


Year	Publication
2002	Dirlewanger E, Cosson P, Tavaud M, Aranzana J, Poizat C, Zanetto A, Arús P, Laigret F. Development of microsatellite markers in peach [ Prunus persica (L.) Batsch] and their use in genetic diversity analysis in peach and sweet cherry ( Prunus avium L.). TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik. 2002 Jul; 105(1):127-138.
2008	Olmstead JW, Sebolt AM, Cabrera A, Sooriyapathirana SS, Hammar S, Iriarte G, Wang D, Chen CY, van der Knaap E, Iezzoni AF. Construction of an intra-specific sweet cherry (Prunus avium L.) genetic linkage map and synteny analysis with the Prunus reference map. Tree Genetics and Genomes. 2008; 4(4):897-910.

Germplasm


Stock Name	Type
OHenry	accession

Map Positions


#	Map Name	Linkage Group	Bin	Position	Locus	MapViewer
1	Apricot-GM-F1	G6	N/A	26.5	BPPCT008	View
2	Almond-VB-F1	G6	N/A	14	BPPCT008	View
3	Peach-GN-F2	G6A	N/A	1	BPPCT008	View
4	Sweet Cherry-EFxNY-F1-2008	EF6	N/A	19.73	BPPCT008	View
5	Peach-CF-F2-2014	6	N/A	2.89	BPPCT008	View
6	Prunus-TE-F2	G6	N/A	30.1	BPPCT008	View
7	Peach-PIxSL-F2	LG6/8	N/A	0	BPPCT008	View
8	Prunus-TE-F2-2015	6	N/A	30	BPPCT008	View
9	Sweet Cherry-WL-F1-Framework	FG6	N/A	20.7	BPPCT008	View
10	Sweet Cherry-WL-F1-2015	LG6	N/A	16.9	BPPCT008	View
11	Peach-DvsS-BC2	LG6	N/A	26	BPPCT008	View
12	Prunus Bin Map	LG6	N/A	30.1	BPPCT008	View
13	Prunus-TxE-peachV2.0	LG6	N/A	30.1	BPPCT008	View
14	Peach-CF-F2	G6	N/A	0	BPPCT008	View
15	Chokecherry-RCxSC-F1-2014	RC VIa	N/A	27.9	BPPCT008-1	View
16	Chokecherry-RCxSC-F1-2014	SC VIb	N/A	12.2	BPPCT008-1	View
17	Chokecherry-RCxSC-F1-2017	Cho-6	N/A	15.06	BPPCT008-1	View
18	Sweet Cherry-PAxPN-94	G6	N/A	38.8	nBPPCT008	View
19	Sweet Cherry-47	G6	N/A	62.8	nBPPCT008	View
20	Peach_Consensus_map_2018	6	N/A	27.54	BPPCT008	View

Annotated Terms

The following terms have been associated with this genetic_marker: