CPSCT022, CPSCT022 (genetic_marker) Prunus salicina

Marker Overview


Name	CPSCT022
Genbank ID	AY426207
Type	SSR
Species	Prunus salicina
Germplasm	Santa Rosa
Source Type	genomic DNA
Repeat Motif	(GA)13
PCR Condition	94 C 1 min, 94 C 30 sec, 62 C 30 sec, 72 C 30 sec. 35 cycles, 72 C 5min
Primer 1	CPSCT022.F primer: TGTCTGCCTCTCATCTTAACCA
Primer 2	CPSCT022.Forward Primer: TGTCTGCCTCTCATCTTAACCA
Primer 3	CPSCT022.R primer: TTCTTGAGCAGCCCATCTTCT
Primer 4	CPSCT022.Reverse Primer: TTCTTGAGCAGCCCATCTTCT
Product Length	173
Publication	[view all]
Contact	P. Arus Maria Badenes
Associated With	GWAS0001919

Contact

Name

Details

P. Arus

First name:	Pere
Last name:	Arus
Institution:	IRTA
Address:	Institut de Recerca I Tecnologia Agroalimentaries (IRTA), Departament de Genetica Vegetal, Carretera de Cabrils s/n, 08348 Cabrils, Spain
Email:	pere.arus@irta.es

Maria Badenes

First name:	Maria
Last name:	Badenes
Institution:	Instituto Valenciano de Investigaciones Agrarias (IVIA)
Address:	Instituto Valenciano de Investigaciones Agrarias, Apartado Oficial 46113 Moncada, Valencia, Spain
Country:	Spain
Email:	badenes_mlu@gva.es

Analyses

This genetic_marker is derived from or has results from the following analyses


Analysis Name	Date Performed
GDR Markers Database	2004-01-01
Alignment of genetic markers to Prunus persics v2.0	2019-04-11

Publications


Year	Publication
2004	Molecular Ecology Notes 4:163-166
2004	Mnejja M, Garcia-Mas J, Howad W, Badenes M, Arus P. Simple-sequece repeat (SSR) markers of Japanese plum (Prunus salicina Lindl.) are highly polymorphic and transferable to peach and almond. Molecular ecology notes. 2004; 4(2):163-166.

Germplasm


Stock Name	Type
Santa Rosa	accession

Map Positions


#	Map Name	Linkage Group	Bin	Position	Locus	MapViewer
1	Almond-NL-F1-2010	G5	N/A	51.54	CPSCT022	View
2	Prunus-TE-F2	G5	N/A	40.7	CPSCT022	View
3	Almond-VB-F1	G5	N/A	56	CPSCT022	View
4	Peach-ScB-F2-2007	G5	N/A	56.69	CPSCT022	View
5	Peach-CF-F2-2014	5	N/A	58.1	CPSCT022	View
6	Prunus-TE-F2-2015	5	N/A	44.7	CPSCT022	View
7	Peach-BN-F1	LG5_Bb	N/A	7.8	CPSCT022	View
8	Prunus-TE-BC1-T1E	G5_T1E	N/A	38.1	CPSCT022	View
9	Prunus Bin Map	LG5	N/A	40.7	CPSCT022	View
10	Prunus-TxE-peachV2.0	LG5	N/A	40.7	CPSCT022	View
11	Peach-CF-F2	G5	N/A	61.8	CPSCT022	View
12	Peach_Consensus_map_2018	5	N/A	61.15	CPSCT022	View

Alignments

Feature Name	Type	Location	Analysis
scaffold_5	supercontig	scaffold_5:16626112..16626607.	Prunus persica Whole Genome v1.0 Assembly & Annotation
Pp05	chromosome	Pp05:16620819..16621314+	Prunus persica Whole Genome Assembly v2.0 & Annotation v2.1 (v2.0.a1)

Annotated Terms

The following terms have been associated with this genetic_marker:

Vocabulary: **Rosaceae Trait Ontology**
Term	Definition
28:fruit flesh color	fruit flesh color