CPSCT033, CPSCT033 (genetic_marker) Prunus salicina | GDR

Marker Overview

Marker Overview


Name	CPSCT033
Genbank ID	AY426218
Type	SSR
Species	Prunus salicina
Germplasm	Santa Rosa
Source Type	genomic DNA genomic
Repeat Motif	(GT)11(GA)13
PCR Condition	94 C 1 min, 94 C 30 sec, 62 C 30 sec, 72 C 30 sec. 35 cycles, 72 C 5min
Primer 1	CPSCT033.F primer: TCCTCATTTGAGTGTTGTGGA
Primer 2	CPSCT033.Forward Primer: TCCTCATTTGAGTGTTGTGGA
Primer 3	CPSCT033.R primer: TGCCCAATTTGAAAACTTTGT
Primer 4	CPSCT033.Reverse Primer: TGCCCAATTTGAAAACTTTGT
Product Length	158
Publication	[view all]
Contact	P. Arus Maria Badenes

Contact

Name

Details

P. Arus

First name:	Pere
Last name:	Arus
Institution:	IRTA
Address:	Institut de Recerca I Tecnologia Agroalimentaries (IRTA), Departament de Genetica Vegetal, Carretera de Cabrils s/n, 08348 Cabrils, Spain
Email:	pere.arus@irta.es

Maria Badenes

First name:	Maria
Last name:	Badenes
Institution:	Instituto Valenciano de Investigaciones Agrarias (IVIA)
Address:	Instituto Valenciano de Investigaciones Agrarias, Apartado Oficial 46113 Moncada, Valencia, Spain
Country:	Spain
Email:	badenes_mlu@gva.es

Alignments

The following features are aligned


Feature Name	Type	Location	Analysis	Reference
scaffold_7	supercontig	scaffold_7:14096733..14097221 .	Prunus persica Whole Genome v1.0 Assembly & Annotation	n/a
Pp07	chromosome	Pp07:13695247..13695735 +	Prunus persica Whole Genome Assembly v2.0 & Annotation v2.1 (v2.0.a1)	n/a

Analyses

This genetic_marker is derived from or has results from the following analyses


Analysis Name	Date Performed
GDR Markers Database	2004-01-01
Alignment of genetic markers to Prunus persics v2.0	2019-04-11

Publications


Year	Publication
2004	Molecular Ecology Notes 4:163-166
2004	Mnejja M, Garcia-Mas J, Howad W, Badenes M, Arus P. Simple-sequece repeat (SSR) markers of Japanese plum (Prunus salicina Lindl.) are highly polymorphic and transferable to peach and almond. Molecular ecology notes. 2004; 4(2):163-166.

Germplasm


Stock Name	Type
Santa Rosa	accession

Map Positions


#	Map Name	Linkage Group	Bin	Position	Locus	MapViewer
1	Peach-JF-F2	G7	N/A	36.5	CPSCT033	View
2	Prunus Bin Map	LG7	N/A	28.4	CPSCT033	View
3	Prunus-TE-F2	G7	N/A	28.4	CPSCT033	View
4	Apricot-GM-F1	G7	N/A	24.3	CPSCT033	View
5	Peach-CF-F2-2014	7	N/A	34.3	CPSCT033	View
6	Flowering Cherry-CYxE750-F1-CY	7	N/A	45.8	CPSCT033	View
7	Prunus-TxE-peachV2.0	LG7	N/A	28.4	CPSCT033	View
8	Peach-CA-BC1-2017	LG7	N/A	30.7	CPSCT033	View
9	Peach-CF-F2	G7	N/A	36.9	CPSCT033	View
10	Sweet Cherry-PAxPN-94	G7	N/A	38.2	nCPSCT033	View
11	Sweet Cherry-47	G7	N/A	24.8	nCPSCT033	View