PceGA59 (genetic_marker) Prunus cerasus | GDR

Marker Overview

Marker Overview


Name	PceGA59
Genbank ID	N/A
Type	SSR
Species	Prunus cerasus
Germplasm	Erdi Botermo ErdiBotermo
Source Type	genomic DNA
Repeat Motif	GA
Primer 1	PceGA59.Forward Primer: AGAACCAAAAGAACGCTAAAATC
Primer 2	PceGA59.Reverse Primer: CCTAAAATGAACCCCTCTACAAAT
Publication	[view all]
Contact	C. Cantini Amy Iezzoni Maria Badenes

Contact

Name

Details

C. Cantini

First name:	C.
Last name:	Cantini

Amy Iezzoni

First name:	Amy
Last name:	Iezzoni
Title:	Professor
Institution:	Michigan State University
Address:	A342 PSSB, East Lansing, MI 48824
Country:	USA
Email:	iezzoni@msu.edu
Phone:	517-355-5191 x1391
Keywords:	cherry breeder
Last update:	Jun 2017

Maria Badenes

First name:	Maria
Last name:	Badenes
Institution:	Instituto Valenciano de Investigaciones Agrarias (IVIA)
Address:	Instituto Valenciano de Investigaciones Agrarias, Apartado Oficial 46113 Moncada, Valencia, Spain
Country:	Spain
Email:	badenes_mlu@gva.es

Alignments

The following features are aligned


Feature Name	Type	Location	Analysis	Reference
Pp01	chromosome	Pp01:18657048..18657226 .	Prunus persica Whole Genome Assembly v2.0 & Annotation v2.1 (v2.0.a1)	GDR marker alignment to genome using primer sequences
PAV01_REGINA	chromosome	PAV01_REGINA:22155609..22155797 .	Prunus avium Regina Genome v1.0 Assembly & Annotation	GDR marker alignment to genome using primer sequences
chr_1	chromosome	chr_1:24282401..24282585 .	Prunus avium Tieton Genome v2.0 Assembly & Annotation	GDR marker alignment to genome using primer sequences
Pd01	chromosome	Pd01:16656285..16656447 .	Prunus dulcis Lauranne Genome v1.0	GDR marker alignment to genome using primer sequences

Publications


Year	Publication
2008	Olmstead JW, Sebolt AM, Cabrera A, Sooriyapathirana SS, Hammar S, Iriarte G, Wang D, Chen CY, van der Knaap E, Iezzoni AF. Construction of an intra-specific sweet cherry (Prunus avium L.) genetic linkage map and synteny analysis with the Prunus reference map. Tree Genetics and Genomes. 2008; 4(4):897-910.
2001	American Society for Horticultural Science. Journal of the American Society for Horticultural Science. J. Am. Soc. Hortic. Sci. Mar 2001. v. 126 (2) p. 205-209. ISSN 0003-1062

Germplasm


Stock Name	Type
Erdi Botermo	accession
ErdiBotermo	accession

Map Positions


#	Map Name	Linkage Group	Bin	Position	Locus	MapViewer
1	Prunus Bin Map	LG1	N/A	26.5	PceGA59	View
2	Prunus-TE-F2	G1	N/A	26.5	PceGA59	View
3	Sweet Cherry-EFxNY-F1-2008	EF1	N/A	63.42	PceGA59	View
4	Apricot-LL-F2-Lito-2011	LG1	N/A	37.7	PceGA59	View
5	Apricot-integrated-Goldrich-2011	LG1	N/A	29.4	PceGA59	View
6	Prunus-TE-BC1-T1E	G1_T1E	N/A	17	PceGA59	View
7	Sweet Cherry-C-303xBenikirari-F1	Pa1	N/A	52.07	PceGA59	View
8	Sweet Cherry-C-309xC-195-50-F1	Pa1	N/A	35.61	PceGA59	View
9	Sweet Cherry-C-309xBenikirari-F1	Pa1	N/A	57.95	PceGA59	View
10	Sweet Cherry-PAV_r1.0_consensus_map-F1	Pa1	N/A	63.14	PceGA59	View
11	Sweet Cherry-PAxPN-94	G1	N/A	41.5	PceGA59	View
12	Sweet Cherry-47	G1	N/A	41.6	PceGA59	View
13	Chokecherry-RCxSC-F1-2014	SC IVb	N/A	12	PceGA59-1	View
14	Chokecherry-RCxSC-F1-2017	Cho-15	N/A	41.67	PceGA59-1	View