UDA-002 (genetic_marker) Prunus dulcis | GDR

Marker Overview

Marker Overview


Name	UDA-002
Genbank ID	BV102479
Type	SSR
Species	Prunus dulcis
Germplasm	Ferragnes
Source Type	genomic DNA
Repeat Motif	(TC)17(AC)18
PCR Condition	95 C 5 min, 94 C 30 sec, 56 C 30 sec, 72 C 50 sec.27 cycles, 72 C 8min
Primer 1	UDA-002.F primer: 5-AAACGTGAGGTCTCACTCTCTC
Primer 2	UDA-002.Forward Primer: AAACGTGAGGTCTCACTCTCTC
Primer 3	UDA-002.R primer: 5-GCCATTTAAGGGTCTGGTCA
Primer 4	UDA-002.Reverse Primer: GCCATTTAAGGGTCTGGTCA
Product Length	146
Publication	[view all]
Contact	R. Testolin Maria Badenes

Contact

Name

Details

R. Testolin

First name:	Raffaele
Last name:	Testolin
Institution:	University of Udine, Italy
Address:	Dipartimento di Scienze Agrarie e Ambientali University of Udine Via delle Scienze 208 I-33100 Udine, Italy
Country:	Italy
Email:	raffaele.testolin@uniud.it
Phone:	0432 558632

Maria Badenes

First name:	Maria
Last name:	Badenes
Institution:	Instituto Valenciano de Investigaciones Agrarias (IVIA)
Address:	Instituto Valenciano de Investigaciones Agrarias, Apartado Oficial 46113 Moncada, Valencia, Spain
Country:	Spain
Email:	badenes_mlu@gva.es

Alignments

The following features are aligned


Feature Name	Type	Location	Analysis	Reference
Pp03	chromosome	Pp03:16591018..16591177 .	Prunus persica Whole Genome Assembly v2.0 & Annotation v2.1 (v2.0.a1)	GDR marker alignment to genome using primer sequences

Publications


Year	Publication
2004	Molecular ecology notes. 2004 Sept., v. 4, no. 3 p. 459-461. 1022612719ISSN 1471-8278
2004	Molecular Ecology Notes 4:459-461

Germplasm


Stock Name	Type
Ferragnes	accession

Map Positions


#	Map Name	Linkage Group	Bin	Position	Locus	MapViewer
1	Almond-NL-F1-2010	G3	N/A	69.43	UDA-002	View
2	Peach-PF-BC1-2005	G3	N/A	43.8	UDA-002	View
3	Prunus Bin Map	LG4	N/A	0	UDA-002	View
4	Peach-HU-F2	G3	N/A	50.3	UDA-002	View
5	Peach-CF-F2-2014	3	N/A	52.79	UDA-002B	View
6	Peach-CF-F2	G3	N/A	36.3	UDA-002B	View