RosBREED_snp_tart_cherry_f_Pp1_12787120, RosBREED_snp_tart_cherry_f_Pp1_12787120 (genetic_marker) Prunus cerasus

Marker Overview
NameRosBREED_snp_tart_cherry_f_Pp1_12787120
dbSNP IDss490546108
SNP Array ID
IRSC 6K SNP array for cherry:RosBREED_snp_tart_cherry_f_Pp1_12787120
TypeSNP
SNP AllelesT/G
SpeciesPrunus cerasus
Libraries
Library NameType
IRSC 6K SNP array for cherrySNP_chip
Analyses
This genetic_marker is derived from or has results from the following analyses
Analysis NameDate Performed
RosBREED SNP development2011-01-01
Alignment of IRSC 6K SNP array for cherry to Peach Genome v2.0.a12016-11-21
Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Prunus-TE-6K cherry SNP-estimate1N/A23.49RosBREED_snp_tart_cherry_f_Pp1_12787120View
2sweet cherry-consensus-map-2012-6K cherry SNP-estimate1N/A64.94RosBREED_snp_tart_cherry_f_Pp1_12787120View
3Sour Cherry-M172x25-F1LG1N/A43.08RosBREED_snp_tart_cherry_f_Pp1_12787120View
4SourCherry-Montx25-F1LG1N/A43.08RosBREED_snp_tart_cherry_f_Pp1_12787120View
5SourCherry-25x25-F1LG1N/A43.08RosBREED_snp_tart_cherry_f_Pp1_12787120View
6Sour Cherry-US-F1LG1N/A43.08RosBREED_snp_tart_cherry_f_Pp1_12787120View
7SourCherry-RE-F1LG1N/A43.08RosBREED_snp_tart_cherry_f_Pp1_12787120View
Sequence
>RosBREED_snp_tart_cherry_f_Pp1_12787120 ID=RosBREED_snp_tart_cherry_f_Pp1_12787120; Name=RosBREED_snp_tart_cherry_f_Pp1_12787120; organism=Prunus cerasus; type=genetic_marker; length=207bp
TCAAATTTTCTAAAAACAAAAAAACAACAAAAAGAAGAAGGACAATCGAG
CACTTTACAATTTTAAGTTTTATTTCGTGGGTCGAAGCCAATTTAAAGAG
G[T/G]TATCGATCAAAAGGGCTAAAGAGAGCGGATTCAAAGCGTTAATG
GGAAAATCTGTGAAATCCAAATTCTGGGTATTTGAGATACAACTGGTGAG
ATTACCT
Alignments
Feature NameTypeLocationAnalysis
scaffold_1 supercontig scaffold_1:12787120..12787120. Prunus persica Whole Genome v1.0 Assembly & Annotation
Pp01 chromosome Pp01:13235348..13235348. Prunus persica Whole Genome Assembly v2.0 & Annotation v2.1 (v2.0.a1)
PAV_r1.0chr1 chromosome PAV_r1.0chr1:10562288..10562288. Prunus avium Whole Genome Assembly v1.0 & Annotation v1 (v1.0.a1)