RosBREED_snp_tart_cherry_f_Pp1_00343932, RosBREED_snp_tart_cherry_f_Pp1_00343932 (genetic_marker) Prunus cerasus

Marker Overview
NameRosBREED_snp_tart_cherry_f_Pp1_00343932
AliasRosBREED_snp_tart_1_00343932
ss490545692
rs268600149
dbSNP IDss490545692
SNP Array ID
IRSC 6K SNP array for cherry:RosBREED_snp_tart_cherry_f_Pp1_00343932
TypeSNP
SNP AllelesA/G
SpeciesPrunus cerasus
Libraries
Library NameType
IRSC 6K SNP array for cherrySNP_chip
Relationships

The following marker_locus feature(s) are an instance of this genetic_marker:

Feature NameUnique NameSpeciesType
RosBREED_snp_tart_cherry_f_Pp1_00343932RosBREED_snp_tart_cherry_f_Pp1_00343932Prunus cerasusmarker_locus


Analyses
This genetic_marker is derived from or has results from the following analyses
Analysis NameDate Performed
RosBREED SNP development2011-01-01
Alignment of IRSC 6K SNP array for cherry to Peach Genome v2.0.a12016-11-21
Sequence
>RosBREED_snp_tart_cherry_f_Pp1_00343932 ID=RosBREED_snp_tart_cherry_f_Pp1_00343932|Name=RosBREED_snp_tart_cherry_f_Pp1_00343932|organism=Prunus cerasus|type=genetic_marker|length=207bp
GATGGGTGGTGGGTTCATCTTTCAACAGAGACAGATTTGGAGACCGGTGC
ATGAGATCATCTTCCTCTTCCTTCTCTTCAAATTCTGGGGCTTTCTCTTT
T[A/G]GATTTGAATCCACCACAACTACAAGGATAACGATAACGTCAGGT
TATTTTCTTCATTTTCTTTTATTTAATTTAAAAAAAATTTATAATTGTTT
CGGTTTA
Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Prunus-TE-6K cherry SNP-estimate1N/A0.77RosBREED_snp_tart_cherry_f_Pp1_00343932View
2sweet cherry-consensus-map-2012-6K cherry SNP-estimate1N/A0RosBREED_snp_tart_cherry_f_Pp1_00343932View
3Sour Cherry-M172x25-F1LG1N/A0RosBREED_snp_tart_cherry_f_Pp1_00343932View
4SourCherry-Montx25-F1LG1N/A0RosBREED_snp_tart_cherry_f_Pp1_00343932View
5SourCherry-25x25-F1LG1N/A0RosBREED_snp_tart_cherry_f_Pp1_00343932View
6Sour Cherry-US-F1LG1N/A0RosBREED_snp_tart_cherry_f_Pp1_00343932View
7SourCherry-RE-F1LG1N/A0RosBREED_snp_tart_cherry_f_Pp1_00343932View
Alignments
Feature NameTypeLocationAnalysis
scaffold_1 supercontig scaffold_1:343932..343932. Prunus persica Whole Genome v1.0 Assembly & Annotation
Pp01 chromosome Pp01:343930..343930. Prunus persica Whole Genome Assembly v2.0 & Annotation v2.1 (v2.0.a1)
PAV_r1.0chr1 chromosome PAV_r1.0chr1:390143..390143. Prunus avium Whole Genome Assembly v1.0 & Annotation v1 (v1.0.a1)