RosBREED_snp_tart_cherry_a_Pp1_08333998, RosBREED_snp_tart_cherry_a_Pp1_08333998 (genetic_marker) Prunus cerasus

Marker Overview
NameRosBREED_snp_tart_cherry_a_Pp1_08333998
dbSNP IDss490545974
SNP Array ID
IRSC 6K SNP array for cherry:RosBREED_snp_tart_cherry_a_Pp1_08333998
TypeSNP
SNP AllelesT/C
SpeciesPrunus cerasus
Libraries
Library NameType
IRSC 6K SNP array for cherrySNP_chip
Analyses
This genetic_marker is derived from or has results from the following analyses
Analysis NameDate Performed
RosBREED SNP development2011-01-01
Alignment of IRSC 6K SNP array for cherry to Peach Genome v2.0.a12016-11-21
Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Prunus-TE-6K cherry SNP-estimate1N/A12.1RosBREED_snp_tart_cherry_a_Pp1_08333998View
2sweet cherry-consensus-map-2012-6K cherry SNP-estimate1N/A38.05RosBREED_snp_tart_cherry_a_Pp1_08333998View
3Sour Cherry-M172x25-F1LG1N/A22.35RosBREED_snp_tart_cherry_a_Pp1_08333998View
4SourCherry-Montx25-F1LG1N/A22.35RosBREED_snp_tart_cherry_a_Pp1_08333998View
5SourCherry-25x25-F1LG1N/A22.35RosBREED_snp_tart_cherry_a_Pp1_08333998View
6Sour Cherry-US-F1LG1N/A22.35RosBREED_snp_tart_cherry_a_Pp1_08333998View
7SourCherry-RE-F1LG1N/A22.35RosBREED_snp_tart_cherry_a_Pp1_08333998View
Sequence
>RosBREED_snp_tart_cherry_a_Pp1_08333998 ID=RosBREED_snp_tart_cherry_a_Pp1_08333998; Name=RosBREED_snp_tart_cherry_a_Pp1_08333998; organism=Prunus cerasus; type=genetic_marker; length=207bp
TTTTGGAATGTAGGGATGAGATGAGAGAATAAAATATAGCTGCAAGAGGA
AAGGATTGAGAGGAGATTGGGTGAATGTGGTTTTGATGTAAAAGCAATAA
G[T/C]CTCTCGTGACTCTTGATTGTTGTTTTGCTCTTTTTGTGGTTGTG
GCCATCGAAGTAGGAAAGCATGTAGTAGGTTCCCGACAACAATGTTAAAA
CCATTCA
Alignments
Feature NameTypeLocationAnalysis
scaffold_1 supercontig scaffold_1:8333998..8333998. Prunus persica Whole Genome v1.0 Assembly & Annotation
Pp01 chromosome Pp01:8783358..8783358. Prunus persica Whole Genome Assembly v2.0 & Annotation v2.1 (v2.0.a1)
PAV_r1.0chr1 chromosome PAV_r1.0chr1:6943299..6943299. Prunus avium Whole Genome Assembly v1.0 & Annotation v1 (v1.0.a1)