RosBREED_snp_tart_cherry_f_Pp1_26767119, RosBREED_snp_tart_cherry_f_Pp1_26767119 (genetic_marker) Prunus cerasus

Marker Overview

Name

RosBREED_snp_tart_cherry_f_Pp1_26767119

dbSNP ID

ss490546350

SNP Array ID

IRSC 6K SNP array for cherry:

RosBREED_snp_tart_cherry_f_Pp1_26767119

Type

SNP

SNP Alleles

T/C

Species

Prunus cerasus

Libraries


Library Name	Type
IRSC 6K SNP array for cherry	SNP_chip

Alignments

The following features are aligned


Feature Name	Type	Location	Analysis	Reference
scaffold_1	supercontig	scaffold_1:26767119..26767119 .	Prunus persica Whole Genome v1.0 Assembly & Annotation	n/a
Pp01	chromosome	Pp01:27741721..27741721 .	Prunus persica Whole Genome Assembly v2.0 & Annotation v2.1 (v2.0.a1)	n/a
PAV_r1.0chr1	chromosome	PAV_r1.0chr1:21674411..21674411 .	Prunus avium Whole Genome Assembly v1.0 & Annotation v1 (v1.0.a1)	n/a

Analyses

This genetic_marker is derived from or has results from the following analyses


Analysis Name	Date Performed
RosBREED SNP development	2011-01-01
Alignment of IRSC 6K SNP array for cherry to Peach Genome v2.0.a1	2016-11-21

Map Positions


#	Map Name	Linkage Group	Bin	Position	Locus	MapViewer
1	Prunus-TE-6K cherry SNP-estimate	1	N/A	36.07	RosBREED_snp_tart_cherry_f_Pp1_26767119	View
2	sweet cherry-consensus-map-2012-6K cherry SNP-estimate	1	N/A	94.64	RosBREED_snp_tart_cherry_f_Pp1_26767119	View
3	Sour Cherry-M172x25-F1	LG1	N/A	75.89	RosBREED_snp_tart_cherry_f_Pp1_26767119	View
4	SourCherry-Montx25-F1	LG1	N/A	75.89	RosBREED_snp_tart_cherry_f_Pp1_26767119	View
5	SourCherry-25x25-F1	LG1	N/A	75.89	RosBREED_snp_tart_cherry_f_Pp1_26767119	View
6	Sour Cherry-US-F1	LG1	N/A	75.89	RosBREED_snp_tart_cherry_f_Pp1_26767119	View

Sequence

>RosBREED_snp_tart_cherry_f_Pp1_26767119 ID=RosBREED_snp_tart_cherry_f_Pp1_26767119; Name=RosBREED_snp_tart_cherry_f_Pp1_26767119; organism=Prunus cerasus; type=genetic_marker; length=207bp
TTAACATGAAGAGTGTAAACATCTTAATTAAGTAAGTTGTGTTGAAATTT
GAACCTAGACAGAAATATGAGTAAGATGAATAAAGTAGAAGTAGAAGCAT
C[T/C]TGCATTTCCGAGGCTCATCCTCCTCAACCTCATCAATCTCTCTT
TGATAGCAGATGGATATATCAGATGAACATAACAGATAGAGGACACGTAC
GTTGAAC