RosBREED_snp_tart_cherry_a_Pp1_21288554, RosBREED_snp_tart_cherry_a_Pp1_21288554 (genetic_marker) Prunus cerasus

Marker Overview
NameRosBREED_snp_tart_cherry_a_Pp1_21288554
dbSNP IDss490546169
SNP Array ID
IRSC 6K SNP array for cherry:RosBREED_snp_tart_cherry_a_Pp1_21288554
TypeSNP
SNP AllelesT/C
SpeciesPrunus cerasus
Libraries
Library NameType
IRSC 6K SNP array for cherrySNP_chip
Analyses
This genetic_marker is derived from or has results from the following analyses
Analysis NameDate Performed
RosBREED SNP development2011-01-01
Alignment of IRSC 6K SNP array for cherry to Peach Genome v2.0.a12016-11-21
Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Prunus-TE-6K cherry SNP-estimate1N/A28.36RosBREED_snp_tart_cherry_a_Pp1_21288554View
2sweet cherry-consensus-map-2012-6K cherry SNP-estimate1N/A74.8RosBREED_snp_tart_cherry_a_Pp1_21288554View
3Sour Cherry-M172x25-F1LG1N/A51.02RosBREED_snp_tart_cherry_a_Pp1_21288554View
4SourCherry-Montx25-F1LG1N/A51.02RosBREED_snp_tart_cherry_a_Pp1_21288554View
5SourCherry-RE-F1LG1N/A51.02RosBREED_snp_tart_cherry_a_Pp1_21288554View
Sequence
>RosBREED_snp_tart_cherry_a_Pp1_21288554 ID=RosBREED_snp_tart_cherry_a_Pp1_21288554; Name=RosBREED_snp_tart_cherry_a_Pp1_21288554; organism=Prunus cerasus; type=genetic_marker; length=207bp
AAGAGATAAATTAAAGAATCTAAAAGTTCCATAGAAAAAACACAAACATA
TTACAAACTAATCATACACAGCTGGAGAAGGGGGTGCTCTTCAAACAGCT
T[T/C]AAAGCAAAAACTCAATATGTTTCTTCTACCAACATCTACTGAAA
CACAGTGAGTTGCAAATAAAACAACCAAAATTGGAAGGTTTCATACACAG
AAACAAG
Alignments
Feature NameTypeLocationAnalysis
scaffold_1 supercontig scaffold_1:21288554..21288554. Prunus persica Whole Genome v1.0 Assembly & Annotation
Pp01 chromosome Pp01:22262589..22262589. Prunus persica Whole Genome Assembly v2.0 & Annotation v2.1 (v2.0.a1)
PAV_r1.0chr1 chromosome PAV_r1.0chr1:16666831..16666831. Prunus avium Whole Genome Assembly v1.0 & Annotation v1 (v1.0.a1)