RosBREEDSNP_SNP_AG_18706948_Lg11_00212_MAF10_MDP0000204530_exon1, RosBREEDSNP_SNP_AG_18706948_Lg11_00212_MAF10_MDP0000204530_exon1 (genetic_marker) Malus x domestica

Marker Overview

Name

RosBREEDSNP_SNP_AG_18706948_Lg11_00212_MAF10_MDP0000204530_exon1

dbSNP ID

SNP Array ID

IRSC 9K SNP array for apple:	RosBREEDSNP_SNP_AG_18706948_Lg11_00212_MAF10_MDP0000204530_exon1
50K SNP array for apple:	AX-105186856

Type

SNP

SNP Alleles

A/G

5' Flanking Sequence

CTTATTCAAGTCTATGATCACATTCATAACCTCTC

3' Flanking Sequence

TTTGCAGATAAGGATGCTATACTGCAACAAGTGC

Species

Malus x domestica

Publication

[view all]

Libraries


Library Name	Type
IRSC 9K SNP array for apple	SNP_chip
50K SNP array for apple	SNP_chip

Analyses

This genetic_marker is derived from or has results from the following analyses


Analysis Name	Date Performed
RosBREED SNP development	2011-01-01

Publications


Year	Publication
2020	Rymenants M, van de Weg E, Auwerkerken A, De Wit I, Czech A, Nijland B, Heuven H, De Storme N, and Keulemans W. Detection of QTL for apple fruit acidity and sweetness using sensorial evaluation in multiple pedigreed full-sib families. Tree Genetics & Genomes 16, 71 (2020). https://doi.org/10.1007/s11295-020-01466-8

Map Positions


#	Map Name	Linkage Group	Bin	Position	Locus	MapViewer
1	Apple-Honeycrisp_Consensus-F1	1	N/A	0	RosBREEDSNP_SNP_AG_18706948_Lg11_00212_MAF10_MDP0000204530_exon1	View

Sequence

>RosBREEDSNP_SNP_AG_18706948_Lg11_00212_MAF10_MDP0000204530_exon1 ID=RosBREEDSNP_SNP_AG_18706948_Lg11_00212_MAF10_MDP0000204530_exon1; Name=RosBREEDSNP_SNP_AG_18706948_Lg11_00212_MAF10_MDP0000204530_exon1; organism=Malus x domestica; type=genetic_marker; length=70bp
CTTATTCAAGTCTATGATCACATTCATAACCTCTCRTTTGCAGATAAGGA
TGCTATACTGCAACAAGTGC

Alignments

Feature Name	Type	Location	Analysis
MDC012792.355	contig	MDC012792.355:11234..11234.	Malus x domestica Whole Genome v1.0 Assembly & Annotation
Chr00	chromosome	Chr00:19988370..19988370.	Malus x domestica GDDH13 v1.1 Whole Genome Assembly & Annotation